| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2551 |
|---|
| Symbol | |
|---|
| ID | 7970028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2693422 |
|---|
| End bp | 2694432 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644793138 |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_002944443 |
|---|
| Protein GI | 239815533 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.484482 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACACCC GCCATCAGCG CCGCGTCTGG CTCTTCGGCA TCGCCTTGCT GGTGCTGGGC
GGCGCGCTGG CGGTGCTCGG CCTGGGCATC GGCAGTACCG GCTTCGAAAG CCTGCGCGCG
GCATGGCGCG ATCCGGTGGC GCTGCGCATC GTCTGGGACA TCCGGCTGCC GCGCACGCTG
GGCGCGTGGC TCGCGGGCGC ACTGCTCGGG CTCGCGGGCT CGGTGGCGCA GGGGCTGTTC
CGCAATCCGC TGGCCGATCC TTATCTGCTG GGCAGCGCCT CGGGGGCTTC GCTCGGCGTG
GCGGTGGCGC TGCTGCTGTT CGGCGGCTCG GCCGCCAGCA CGCAATGGGC GATGCGCCTG
GGGCTCACGG GCGCGGCCTT CGTGGGCGCG GTGCTCGCGG TGATGCTCAC GCTGGTGCTC
GCGCGCGGCG TGCAGCAGAC GCTGCGGCTG CTGCTCGCGG GCGTGATCGT CGGCGTGGTG
CTCGGCGCCG CCAAGGACCT GATCACCATC GCCTCGGCCG ACATCCTGCA GGCCATCCAG
GGCTTCATCC TCGGCAGCAC AGGCCTGGTC GGCTGGAGCG CATGCGCGGT GATGGCCGCG
GTCGGTGCGG TGTGCCTGCT GCTGGGCTGG GCGCTCGCGC CGGTGCTCGA CGGCCTTGCG
CTCGGCGAAG CGACGGCCCG CAGCCTCGGC CTGCCGCTGG GCGCGATGCG CGCCACGCTG
GTGGTGGTGC TCGCGCTGGG CACCGGCGCA GCGGTGGCGC AGACCGGGCT CATCGCCTTC
GTCGGCCTGG CCGCGCCGCA CCTCGTGCGC TCGGTGGTCA AGACCACGCA TGCCGGGTTG
ATCGTGCTGT CGGCCGCGAT GGGCGGCCTG CTGCTGATGG CGGCCGACCT GCTGGCGCGC
TGGCTCATCG CGCCGCAGGA ACTGCCCGTG GGCGTGCTCA CGGCGGTGCT CGGCGGCAGC
TACCTGCTGT GGCTGATGCA CAGGCGCAGC GCGCGGGGCG GGGTGGCATG A
|
|---|
| Protein sequence | MHTRHQRRVW LFGIALLVLG GALAVLGLGI GSTGFESLRA AWRDPVALRI VWDIRLPRTL
GAWLAGALLG LAGSVAQGLF RNPLADPYLL GSASGASLGV AVALLLFGGS AASTQWAMRL
GLTGAAFVGA VLAVMLTLVL ARGVQQTLRL LLAGVIVGVV LGAAKDLITI ASADILQAIQ
GFILGSTGLV GWSACAVMAA VGAVCLLLGW ALAPVLDGLA LGEATARSLG LPLGAMRATL
VVVLALGTGA AVAQTGLIAF VGLAAPHLVR SVVKTTHAGL IVLSAAMGGL LLMAADLLAR
WLIAPQELPV GVLTAVLGGS YLLWLMHRRS ARGGVA
|
|---|
| |