| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2506 |
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| Symbol | |
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| ID | 7969571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2640090 |
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| End bp | 2640947 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644793089 |
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| Product | squalene synthase HpnC |
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| Protein accession | YP_002944398 |
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| Protein GI | 239815488 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.710681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCTCCT GGCTGTGCCC GCCGCATCTG CGGCCGCCGA TTGCCGCGAT CTACCATTTC
GCGCGCACCG CGGACGACAT CGCGGATGAA GGCGACGCCT CGCCCGGCCA GCGGCTGGCC
GATCTTCGCG CCTACCGCGA GGAGCTGGCA GCCGCCGCGC ACGGAGAGGT GGCGCCCTCC
TCGCGCTGGC CCCAGGTGTT CGGCCCGCTC GCACACAGCA TCGCGCAGTT CAAGCTTCCC
GAACAACTGC TCGCCGACCT GCTGAGCGCC TTCATGCAGG ACATCGAGAA GACCCGCGAC
GGCGGAACCT ACGCCGACCG CGCCGAACTG CTCGACTACT GCCGCCGCTC CGCCAACCCG
GTCGGCCGCC TGCTGCTGCA TCTGTATGGC GTGAACGATG CGCAGGCGCT GGCGCAAAGC
GACGCCATCT GCAGCGCGCT GCAACTCATC AATTTCTGGC AGGACCCGAG CGTGGACCTG
CCGCGCGGCC GCTTCTACCC GCCGCTGGCC GATTGCGCAC GGCGCGGCCT CACGCGCGAG
AGCTTCAAGG TCTTCATGCC GCTGGCCGGC GCGCCGCCGC CGCAGGAAGC CATCAACCTG
ATCGCCGTCG AAAGCGCCTG GGCGCGGGAG CTGATGGCCG AAGGCGCGCC GCTGGTCCAT
CGCCTGCCGG GCCGCGCCGG CTGGGAGCTG CGCTTCGTCG TGCAGGGCGG TTTGCGCATT
CTCGACAAGA TCGAGGACCT GGGCTTCGAC ACCTTTTCGC AGCGCCCGAA AATAGGCAAG
GCCGACGCTC CGCTGCTGGC CTGGCGCGCC CTTCGGATGC GGAGACAATT GCGGCCCATG
AAAGCGCCCC TCCGATGA
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| Protein sequence | MASWLCPPHL RPPIAAIYHF ARTADDIADE GDASPGQRLA DLRAYREELA AAAHGEVAPS
SRWPQVFGPL AHSIAQFKLP EQLLADLLSA FMQDIEKTRD GGTYADRAEL LDYCRRSANP
VGRLLLHLYG VNDAQALAQS DAICSALQLI NFWQDPSVDL PRGRFYPPLA DCARRGLTRE
SFKVFMPLAG APPPQEAINL IAVESAWARE LMAEGAPLVH RLPGRAGWEL RFVVQGGLRI
LDKIEDLGFD TFSQRPKIGK ADAPLLAWRA LRMRRQLRPM KAPLR
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