| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2501 |
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| Symbol | |
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| ID | 7969566 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2636632 |
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| End bp | 2637363 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644793084 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
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| Protein accession | YP_002944393 |
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| Protein GI | 239815483 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCCG CTTCCACGGC GCCGGCAAGC GCCGCGCCCC TCGACATCAA GCGCATCTCG
GCGATCTCGC TCGACCTGGA CGACACCCTC TGGCCGATCT GGCCGACCAT CGAGCGCGCC
GAGACCGTGC TGCAGCAATG GCTGCTGCGC GAGGCACCCA AGACCGCCTC GCTGCTGCTG
ACGCCGGGCG TCTTGCGCGA GCTGCGCGAA GCCACCGCCA AGGAGCGCTC CGACCTGGCG
CACGACCTGA GTGCGTTGCG CCGCGAGTCG ATCCGCGCGG CACTCAGGCA CGCGGGCGAA
GACCCGGCGC TGGCCGATCC GGCCTTCGAT GCCTTCTTTG CCGAACGCCA GCGCGTGACG
CTCTACGAAG ACGCGCTGCC GGCCCTCAAG TGGCTCAGCG AGCGCTATCC GCTGGTGGCG
GTGTCGAACG GCAATGCGGA CATCCACCAG ACCGGCGTCG GCCGATGGTT CCGCACCGCG
TTCAACGCGC GCGCCTTCGG CAGCGGCAAG CCGCATGCGC CGATCTTCCG CGCCGCGGCC
GCATCGGTCG GCCTGTTGCC CAAGGACGTG CTGCACGTGG GCGACGACGC CGAGCTCGAC
GTGGTCGGCG CGCTCAACGC CGGCATGCAG GCGGCCTGGC TGGTGCGCGA CGAGCGCCCG
TGGGTGCATG GCGCGCGGCC CCAGCTGATC GTGCCGAACC TGCACGCGCT GTGCGTGGCG
CTCGGCGCCT GA
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| Protein sequence | MTSASTAPAS AAPLDIKRIS AISLDLDDTL WPIWPTIERA ETVLQQWLLR EAPKTASLLL
TPGVLRELRE ATAKERSDLA HDLSALRRES IRAALRHAGE DPALADPAFD AFFAERQRVT
LYEDALPALK WLSERYPLVA VSNGNADIHQ TGVGRWFRTA FNARAFGSGK PHAPIFRAAA
ASVGLLPKDV LHVGDDAELD VVGALNAGMQ AAWLVRDERP WVHGARPQLI VPNLHALCVA
LGA
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