Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_2489 |
Symbol | |
ID | 7969554 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 2627716 |
End bp | 2630946 |
Gene Length | 3231 bp |
Protein Length | 1076 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644793072 |
Product | hypothetical protein |
Protein accession | YP_002944381 |
Protein GI | 239815471 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAGCACTC AGCAAATCCT CGGCGTCGTC GGCGGAGTCG TCGGCGCGTT CTTCGGTTAT CCGCAGCTGG GCTTCGTGGT GGGCTCGCTC GTGGGCGGGT TGTTGACGCC TGGCGAGAAG ACGGAGGGGC CGCGCGTCGA TGACCTGAAG GTGCAGGTAT CGACCTATGG CGCCGGCATC CCGATCCTCT ACGGCACCGA GCGTATCGGC GGCAATGTGG TCTGGTCGAC GGACAAGATC GAGATTGCGG AGACCACGGG CGGCAAGGGC GGTGGCCCCG AGAACACGAC CTATCGCTAC TACGTGCACA TGGGCATTGT GCTGTGCGAG ACGCCGCGGG ATGGCTCCAT CGTGAGCATT GTCGAAATCT TCCAAGATGG CAAGTTGATC TATGACGCGC GGTCGGGCAT CCCGATTGGC TCAGCGCTCG CCAGCTCGGA GAATCCGAAC GCCTATTTCG TCCTGTACCA GGGTCATGCG GACCAGCTGC CGGATCCAGG CGAAGAGGCC TGGATGGGTG GCCCTGGCAG CGTGCCCGCC TATCGCGGGG TCGTGCGCAT TCGCATGAAC GCGATCGAGT GCCCTGGGGG GCGTGTGCCT CAGTTCTCTT TTGTGCTGTC GACTTCGTCC TCCGCCAGTG TCGAGAAGTT GCAGATCGCC ACCGTGCCCA AGGTGTCGAA CGAGGGGGTG TTTGCATACG TCGGTATCGA CCAGACATTG CACATCAGCG AGCGTGAGAG TGCCGGCGTT TACAAGCTCT ACCAGACAAC GGTCGGAAGC GGGTACTCGA AAGAGGGTGC AACCATCACG CTGCCGGCCC GGGGGGATGC CTGCGTCCCC ATCATTGGCA TGCCCGTCAC CGACACTGCG GTTTGCCGGC CTGCAGGCGA CTACTCGGGC CTGGTGAGCG ACTTCTATGC GCATCCGAAA TGGCTGGAGC GCATCGACAT GAGCACCGGA GTTGCATCGC ACCTCCTGGA TTACGAAGGC AGCGACGCGA ATCACGTCTT TCGCAGCGGA ACGGGCCTGA GTGTGGCTTA TGACTCTTTG GATGGCTACT TTGCCGCTGC GACGGTCGAG GCGGTTTCTG GTGGAAATGT TTATGCCGCC AATCCAATCA TCTTCAGAGA TGGGGTTGTC ACGCCTGTTG CGGATGCCAT CCCCGGCGGC ACCACGCTGC CAATCGCCAT CTACGGAGGC GTGCTCGCTG TGCTCAATGA CCGAGGCGGA AACTACTACG TCCGCAAGTA TTCTGCCGAA ACGCTCGCTC TGATAGAGGA AATCCAAGGC CCGAGCAGTG TAGGAGCGGT GGACACTGTT TCCTCGGCGC TGCGCTTCGA TGCTACTGGG CTCTTCGCCT GGGTCTATCT CTCTGGCGGT GCGGCGCTGT ACTCGGTATC CGACGCAGGA TGGGTTCTGC TGTGCGCGAG CGCCAACAAT GCGATAGGCC AGAAGGAGGT TTCGCGGCCG ACCACGTTCT ACAACGGTGG CGACAGCATG ATCATTGGGC CAAGCGACCA AACGGACCGT GCCTACGATC TGATCAGGTT CAATGCGGTC AGTCTCAATT CGGTCAGGGT CAAGGACATC ATCGCGGACC AATGCGAGCG GGCTGGAGAA ACCCGGTTCG ATGTCAGCGA CATTCCGGAT ACGGACACGC TCATCGGGTT CAAGCTGCAG AACCCGGCCA GCGCCCGCTC AAATGTCGAT CCGCTGCTGA CGGCATATGC GGCATATATC GTCGATGAAG ACGGCCTGAT CAAGTTCAAG AAGTACCAGG ACATCGTCTC AGAGGCCACG ATCGTCTACG ACGAACTCGG ACAGGCGGAG GACGGCGCCG AGCCAGCAGA TGCAATGCCG CTCAACCGCG CGCAGGAGAT CGACCTGCCG CGAAGCGTCT CGGTGAGTTA CATCGAGCCG GCGATCGACT ATCAGACCGC GGCGGAAAAG GAAGTCCGGC AGATCACGGA GGCGGCGGAG GATCTGATCG TCGAGTTGCC GATCGCGACG AGTTCGGATC ATGCCAAGCA AGTCGCGGCG ATGATCCTGT TCGCGAAGTG GCGCGCGCAG AACACGCGCA GTTTCAAGAC CTCGCGCAAG TACGCATTCC TGTCGCCCGG CGATGGCGTC ACCGTCGAAT ACCCACGCGG CACCTTCCGT CTTTGGCGCA TCACCAGCAT GACGGACACG GGCGCCTTGT GCGAGTTCAA TGTCGAGCCC GGCGACGCCG AGCTTTACAT GCAAACGGCG GTGGGCGCCA CTGGATATGT TGGGCAGGAT GTGGCGCCAC TCGCGCCTCC GACAGAGCTT GCCATTGTCG ACGGCCCAAT CATGCAGGAC GCAGACAACA ACGCGGGGCT CTATGCGGCC ATGGAGGGGT ATGCCGCAGG CTGGCCCGGC GCCGAACTTC GTGTGGGTGA CACTGAGGCG GCGCTGGAGC CGGTCGGCAC CGTCAACAAT GAGGCTGTGA TCGGCTTCAC CGAGACGGCG CTCGGAGACT TTTCCCCGAA TGTGGTGGAC GAGATCAACC TGCTGACCGT CAACATCGGC AATGGCTCGC TCGCGAGCAT CACCCGAGAC GTGCTCATCA ATGGGCGTTC CAATGTTGCC GTCGTCGGGG TGAATGGTCG CCTGGAGGTG ATCAAGTTCC AGCGTGCTGG CAGCTTGGGT GCAGGGCGCT ACATCCTCTC CGGGCTACTG CGCGGCCTTC GCGGCACTGA ATGGGCGACC GGGACTCACC AGGTCAACGA CAGGTTCGTG TTGATGGGAG TGGAGGGCAC GCTGAGGCCG AACTTCGATG TCGGCTCGCT CGGCCAGTCC AAGATCTACA AGGCCGTAAC GAAGGGAAGA CGTGCCGACG GCGTTGCCAC TCAGACCTAC GCGAACACGG GCGAGGGCCT CAGGCCCTTC AGTCCAGTGG ATCTGCGCAA GAGTATCTCG AGCAACAACA TCACCTTGAC CTGGGGCAGG CGCTCACGCA TGAGCGACAG CGTCCTGACC ACGGGCGCCA TTCCTCTCGG CGAATCCGTG GAGCGCTACG ACGTGGCGAT CTACAGCGAT GGAGCCTTTG CGACCATCAA GCGCGTGATC TCGGCCTACG GTGCCACGGC CGTCTACACG AGCGCTGACC AGATTGCCGA TTTCGGCGCC AACCAGACGA CGCTCTTTGT GCGCGTCTAT CAGCTCAGCG ACGCCGTCGG TCGCGGGCAT GAACTCCAGG CCACTATATG A
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Protein sequence | MSTQQILGVV GGVVGAFFGY PQLGFVVGSL VGGLLTPGEK TEGPRVDDLK VQVSTYGAGI PILYGTERIG GNVVWSTDKI EIAETTGGKG GGPENTTYRY YVHMGIVLCE TPRDGSIVSI VEIFQDGKLI YDARSGIPIG SALASSENPN AYFVLYQGHA DQLPDPGEEA WMGGPGSVPA YRGVVRIRMN AIECPGGRVP QFSFVLSTSS SASVEKLQIA TVPKVSNEGV FAYVGIDQTL HISERESAGV YKLYQTTVGS GYSKEGATIT LPARGDACVP IIGMPVTDTA VCRPAGDYSG LVSDFYAHPK WLERIDMSTG VASHLLDYEG SDANHVFRSG TGLSVAYDSL DGYFAAATVE AVSGGNVYAA NPIIFRDGVV TPVADAIPGG TTLPIAIYGG VLAVLNDRGG NYYVRKYSAE TLALIEEIQG PSSVGAVDTV SSALRFDATG LFAWVYLSGG AALYSVSDAG WVLLCASANN AIGQKEVSRP TTFYNGGDSM IIGPSDQTDR AYDLIRFNAV SLNSVRVKDI IADQCERAGE TRFDVSDIPD TDTLIGFKLQ NPASARSNVD PLLTAYAAYI VDEDGLIKFK KYQDIVSEAT IVYDELGQAE DGAEPADAMP LNRAQEIDLP RSVSVSYIEP AIDYQTAAEK EVRQITEAAE DLIVELPIAT SSDHAKQVAA MILFAKWRAQ NTRSFKTSRK YAFLSPGDGV TVEYPRGTFR LWRITSMTDT GALCEFNVEP GDAELYMQTA VGATGYVGQD VAPLAPPTEL AIVDGPIMQD ADNNAGLYAA MEGYAAGWPG AELRVGDTEA ALEPVGTVNN EAVIGFTETA LGDFSPNVVD EINLLTVNIG NGSLASITRD VLINGRSNVA VVGVNGRLEV IKFQRAGSLG AGRYILSGLL RGLRGTEWAT GTHQVNDRFV LMGVEGTLRP NFDVGSLGQS KIYKAVTKGR RADGVATQTY ANTGEGLRPF SPVDLRKSIS SNNITLTWGR RSRMSDSVLT TGAIPLGESV ERYDVAIYSD GAFATIKRVI SAYGATAVYT SADQIADFGA NQTTLFVRVY QLSDAVGRGH ELQATI
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