Gene Vapar_2489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2489 
Symbol 
ID7969554 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2627716 
End bp2630946 
Gene Length3231 bp 
Protein Length1076 aa 
Translation table11 
GC content62% 
IMG OID644793072 
Producthypothetical protein 
Protein accessionYP_002944381 
Protein GI239815471 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGCACTC AGCAAATCCT CGGCGTCGTC GGCGGAGTCG TCGGCGCGTT CTTCGGTTAT 
CCGCAGCTGG GCTTCGTGGT GGGCTCGCTC GTGGGCGGGT TGTTGACGCC TGGCGAGAAG
ACGGAGGGGC CGCGCGTCGA TGACCTGAAG GTGCAGGTAT CGACCTATGG CGCCGGCATC
CCGATCCTCT ACGGCACCGA GCGTATCGGC GGCAATGTGG TCTGGTCGAC GGACAAGATC
GAGATTGCGG AGACCACGGG CGGCAAGGGC GGTGGCCCCG AGAACACGAC CTATCGCTAC
TACGTGCACA TGGGCATTGT GCTGTGCGAG ACGCCGCGGG ATGGCTCCAT CGTGAGCATT
GTCGAAATCT TCCAAGATGG CAAGTTGATC TATGACGCGC GGTCGGGCAT CCCGATTGGC
TCAGCGCTCG CCAGCTCGGA GAATCCGAAC GCCTATTTCG TCCTGTACCA GGGTCATGCG
GACCAGCTGC CGGATCCAGG CGAAGAGGCC TGGATGGGTG GCCCTGGCAG CGTGCCCGCC
TATCGCGGGG TCGTGCGCAT TCGCATGAAC GCGATCGAGT GCCCTGGGGG GCGTGTGCCT
CAGTTCTCTT TTGTGCTGTC GACTTCGTCC TCCGCCAGTG TCGAGAAGTT GCAGATCGCC
ACCGTGCCCA AGGTGTCGAA CGAGGGGGTG TTTGCATACG TCGGTATCGA CCAGACATTG
CACATCAGCG AGCGTGAGAG TGCCGGCGTT TACAAGCTCT ACCAGACAAC GGTCGGAAGC
GGGTACTCGA AAGAGGGTGC AACCATCACG CTGCCGGCCC GGGGGGATGC CTGCGTCCCC
ATCATTGGCA TGCCCGTCAC CGACACTGCG GTTTGCCGGC CTGCAGGCGA CTACTCGGGC
CTGGTGAGCG ACTTCTATGC GCATCCGAAA TGGCTGGAGC GCATCGACAT GAGCACCGGA
GTTGCATCGC ACCTCCTGGA TTACGAAGGC AGCGACGCGA ATCACGTCTT TCGCAGCGGA
ACGGGCCTGA GTGTGGCTTA TGACTCTTTG GATGGCTACT TTGCCGCTGC GACGGTCGAG
GCGGTTTCTG GTGGAAATGT TTATGCCGCC AATCCAATCA TCTTCAGAGA TGGGGTTGTC
ACGCCTGTTG CGGATGCCAT CCCCGGCGGC ACCACGCTGC CAATCGCCAT CTACGGAGGC
GTGCTCGCTG TGCTCAATGA CCGAGGCGGA AACTACTACG TCCGCAAGTA TTCTGCCGAA
ACGCTCGCTC TGATAGAGGA AATCCAAGGC CCGAGCAGTG TAGGAGCGGT GGACACTGTT
TCCTCGGCGC TGCGCTTCGA TGCTACTGGG CTCTTCGCCT GGGTCTATCT CTCTGGCGGT
GCGGCGCTGT ACTCGGTATC CGACGCAGGA TGGGTTCTGC TGTGCGCGAG CGCCAACAAT
GCGATAGGCC AGAAGGAGGT TTCGCGGCCG ACCACGTTCT ACAACGGTGG CGACAGCATG
ATCATTGGGC CAAGCGACCA AACGGACCGT GCCTACGATC TGATCAGGTT CAATGCGGTC
AGTCTCAATT CGGTCAGGGT CAAGGACATC ATCGCGGACC AATGCGAGCG GGCTGGAGAA
ACCCGGTTCG ATGTCAGCGA CATTCCGGAT ACGGACACGC TCATCGGGTT CAAGCTGCAG
AACCCGGCCA GCGCCCGCTC AAATGTCGAT CCGCTGCTGA CGGCATATGC GGCATATATC
GTCGATGAAG ACGGCCTGAT CAAGTTCAAG AAGTACCAGG ACATCGTCTC AGAGGCCACG
ATCGTCTACG ACGAACTCGG ACAGGCGGAG GACGGCGCCG AGCCAGCAGA TGCAATGCCG
CTCAACCGCG CGCAGGAGAT CGACCTGCCG CGAAGCGTCT CGGTGAGTTA CATCGAGCCG
GCGATCGACT ATCAGACCGC GGCGGAAAAG GAAGTCCGGC AGATCACGGA GGCGGCGGAG
GATCTGATCG TCGAGTTGCC GATCGCGACG AGTTCGGATC ATGCCAAGCA AGTCGCGGCG
ATGATCCTGT TCGCGAAGTG GCGCGCGCAG AACACGCGCA GTTTCAAGAC CTCGCGCAAG
TACGCATTCC TGTCGCCCGG CGATGGCGTC ACCGTCGAAT ACCCACGCGG CACCTTCCGT
CTTTGGCGCA TCACCAGCAT GACGGACACG GGCGCCTTGT GCGAGTTCAA TGTCGAGCCC
GGCGACGCCG AGCTTTACAT GCAAACGGCG GTGGGCGCCA CTGGATATGT TGGGCAGGAT
GTGGCGCCAC TCGCGCCTCC GACAGAGCTT GCCATTGTCG ACGGCCCAAT CATGCAGGAC
GCAGACAACA ACGCGGGGCT CTATGCGGCC ATGGAGGGGT ATGCCGCAGG CTGGCCCGGC
GCCGAACTTC GTGTGGGTGA CACTGAGGCG GCGCTGGAGC CGGTCGGCAC CGTCAACAAT
GAGGCTGTGA TCGGCTTCAC CGAGACGGCG CTCGGAGACT TTTCCCCGAA TGTGGTGGAC
GAGATCAACC TGCTGACCGT CAACATCGGC AATGGCTCGC TCGCGAGCAT CACCCGAGAC
GTGCTCATCA ATGGGCGTTC CAATGTTGCC GTCGTCGGGG TGAATGGTCG CCTGGAGGTG
ATCAAGTTCC AGCGTGCTGG CAGCTTGGGT GCAGGGCGCT ACATCCTCTC CGGGCTACTG
CGCGGCCTTC GCGGCACTGA ATGGGCGACC GGGACTCACC AGGTCAACGA CAGGTTCGTG
TTGATGGGAG TGGAGGGCAC GCTGAGGCCG AACTTCGATG TCGGCTCGCT CGGCCAGTCC
AAGATCTACA AGGCCGTAAC GAAGGGAAGA CGTGCCGACG GCGTTGCCAC TCAGACCTAC
GCGAACACGG GCGAGGGCCT CAGGCCCTTC AGTCCAGTGG ATCTGCGCAA GAGTATCTCG
AGCAACAACA TCACCTTGAC CTGGGGCAGG CGCTCACGCA TGAGCGACAG CGTCCTGACC
ACGGGCGCCA TTCCTCTCGG CGAATCCGTG GAGCGCTACG ACGTGGCGAT CTACAGCGAT
GGAGCCTTTG CGACCATCAA GCGCGTGATC TCGGCCTACG GTGCCACGGC CGTCTACACG
AGCGCTGACC AGATTGCCGA TTTCGGCGCC AACCAGACGA CGCTCTTTGT GCGCGTCTAT
CAGCTCAGCG ACGCCGTCGG TCGCGGGCAT GAACTCCAGG CCACTATATG A
 
Protein sequence
MSTQQILGVV GGVVGAFFGY PQLGFVVGSL VGGLLTPGEK TEGPRVDDLK VQVSTYGAGI 
PILYGTERIG GNVVWSTDKI EIAETTGGKG GGPENTTYRY YVHMGIVLCE TPRDGSIVSI
VEIFQDGKLI YDARSGIPIG SALASSENPN AYFVLYQGHA DQLPDPGEEA WMGGPGSVPA
YRGVVRIRMN AIECPGGRVP QFSFVLSTSS SASVEKLQIA TVPKVSNEGV FAYVGIDQTL
HISERESAGV YKLYQTTVGS GYSKEGATIT LPARGDACVP IIGMPVTDTA VCRPAGDYSG
LVSDFYAHPK WLERIDMSTG VASHLLDYEG SDANHVFRSG TGLSVAYDSL DGYFAAATVE
AVSGGNVYAA NPIIFRDGVV TPVADAIPGG TTLPIAIYGG VLAVLNDRGG NYYVRKYSAE
TLALIEEIQG PSSVGAVDTV SSALRFDATG LFAWVYLSGG AALYSVSDAG WVLLCASANN
AIGQKEVSRP TTFYNGGDSM IIGPSDQTDR AYDLIRFNAV SLNSVRVKDI IADQCERAGE
TRFDVSDIPD TDTLIGFKLQ NPASARSNVD PLLTAYAAYI VDEDGLIKFK KYQDIVSEAT
IVYDELGQAE DGAEPADAMP LNRAQEIDLP RSVSVSYIEP AIDYQTAAEK EVRQITEAAE
DLIVELPIAT SSDHAKQVAA MILFAKWRAQ NTRSFKTSRK YAFLSPGDGV TVEYPRGTFR
LWRITSMTDT GALCEFNVEP GDAELYMQTA VGATGYVGQD VAPLAPPTEL AIVDGPIMQD
ADNNAGLYAA MEGYAAGWPG AELRVGDTEA ALEPVGTVNN EAVIGFTETA LGDFSPNVVD
EINLLTVNIG NGSLASITRD VLINGRSNVA VVGVNGRLEV IKFQRAGSLG AGRYILSGLL
RGLRGTEWAT GTHQVNDRFV LMGVEGTLRP NFDVGSLGQS KIYKAVTKGR RADGVATQTY
ANTGEGLRPF SPVDLRKSIS SNNITLTWGR RSRMSDSVLT TGAIPLGESV ERYDVAIYSD
GAFATIKRVI SAYGATAVYT SADQIADFGA NQTTLFVRVY QLSDAVGRGH ELQATI