| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2454 |
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| Symbol | |
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| ID | 7969518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2604601 |
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| End bp | 2605317 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644793036 |
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| Product | hypothetical protein |
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| Protein accession | YP_002944346 |
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| Protein GI | 239815436 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1423] ATP-dependent DNA ligase, homolog of eukaryotic ligase III |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000820682 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGCGG CCAAGAACAC CAAGCCGCTC GGGGGCAAAG CCTATGGCTC GACCCCGCAC
CTTCCCGGCA GCCGCGTAGG CCCCAGCGAT CACCACTGCC ACGAAGGCCA GCGCGTGATT
TGCGAAGAGA AGGCGCGCGA CAAGCACGAT CGCGTGATCG TCACCGAGAA GCTGGACGGC
AGCAATGTCG CCGTGGCCAA GGTCGACGGC CGAATCGTTG CCCTGACCCG CGCAGGCTAT
GCCGCGATTA CCTCGCCATA TCCGCAACAC CATTACTTCG GCTGGTGGGT GGAAGGGCGC
CGCGACCTCT TCCATTGCCT GCTAAGCGAA GGCGAGATGA TCAACGGCGA GTGGCTGGTG
CTGGCCCACG GGACCATATA CCAGTTGCCA CACGACCCTT TTGTGGCGTT CTCCATGGCC
GCGAACAAGA AGCGCTTGCC GTGGGATGAA GTCGCGCTGC GCTGCGCCAA TGCAGGCATC
ACCACGCCGC GCGTGCTGTC CGACGGACCG CCCATCAGCG TCGAGGCCGT CAAGCAGCTT
ATCTCCGTCA GCGGCCACGG CGCACTCGAT CCAGTCGAAG GTGCTGTGTG GCGCGTCGAG
AGCCGCGGCG AGTTCGACTT TTTGGCGAAG TGGGTGAGCC CAGCCAAGGA AGACGGCAAA
TACCTGAACG ACATCACGGG TCACCCGGAA ACGTGGCTCT GGAAGGCGGC CGCATGA
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| Protein sequence | MEAAKNTKPL GGKAYGSTPH LPGSRVGPSD HHCHEGQRVI CEEKARDKHD RVIVTEKLDG
SNVAVAKVDG RIVALTRAGY AAITSPYPQH HYFGWWVEGR RDLFHCLLSE GEMINGEWLV
LAHGTIYQLP HDPFVAFSMA ANKKRLPWDE VALRCANAGI TTPRVLSDGP PISVEAVKQL
ISVSGHGALD PVEGAVWRVE SRGEFDFLAK WVSPAKEDGK YLNDITGHPE TWLWKAAA
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