Gene Vapar_2448 details

Gene Information

• Locus tag: Vapar_2448
• ID: 7969512
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 2601570
• End bp: 2602160
• Gene Length: 591 bp
• Protein Length: 196 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644793030
• Product: transcriptional regulator, XRE family
• Protein accession: YP_002944340
• Protein GI: 239815430
• COG category: [K] Transcription
• COG ID: [COG1396] Predicted transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000416057
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATTCAT TCGCATCGAC CTTCGCATCG AACCTGAAGC GGCTGCGCAC GGAGCGCTTC 
CTGACCCAGA AGCAACTGGC GGACGCCATT CGCATCACCA CGCGGACACT CATCCGATGG 
GAGAACGCGG AAGGTGAGCC GGGCATCTCC GAACTGCGGA TGCTGGCCAG CTTCTTCGAC 
ATCGGCATCG ACCAACTCAT CAGCGATCTG CTGCCGCCGA ACGATAGTGG CGCACTGGCC 
CGTGTGGCGG ACCTTGCATG CCCGCTGCTC GACTACTGGA TAGCTAGGAC GCAGGGCATG 
TCGGTCGAGC TCACACCCGA CGGCCCGGTG ATGTACGAGG CCGGCGTAGG GCAATCCCCC 
GTTCCGCAGT TCAGCGGCGA TCTTGCGCTG ATCGAGCCGC TGATGCGCGG CAAAGGGGTG 
CAACTGGAAA CCCTGCGTGC CGGGGCCGCA TTCGATGGCG CGGCCAAGAC AGGGGATGGA 
TGGGTCGCGC GATGCAACGA ATGCGCGACC GCCTACTGGG GCAAGACCAT TGCCGAGGCC 
GGGGCGCGCG CATGGCTCGC CTCTGAGGTC GGCCCGGTCA TCGCGGTATG A 

 

Protein sequence

MDSFASTFAS NLKRLRTERF LTQKQLADAI RITTRTLIRW ENAEGEPGIS ELRMLASFFD 
IGIDQLISDL LPPNDSGALA RVADLACPLL DYWIARTQGM SVELTPDGPV MYEAGVGQSP 
VPQFSGDLAL IEPLMRGKGV QLETLRAGAA FDGAAKTGDG WVARCNECAT AYWGKTIAEA 
GARAWLASEV GPVIAV