Gene Vapar_2386 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2386 
Symbol 
ID7970429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp2550065 
End bp2551540 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content69% 
IMG OID644792968 
Productprotease Do 
Protein accessionYP_002944279 
Protein GI239815369 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.444921 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACCC GACTGACTTC CCCCCATGCC CTGGTGCTTG CCTTGGCGAC CGCCGGGGTC 
ATCGGTGCCG TCGGTGCCGG CGCCTACACC AGTGCCCGCG CCGTGAATGC GCCGACCACC
AACGCCACGA GCGTGGCGCC CGCGGCCATG GTGACGCTGC CCGACTTCTC CACCATCACT
TCGCGCGACG GTCCCGCGGT GGTCAACATC AGCGTGACGG GCACCGCCAA GGCGTCCGAG
GACCAGGCCG CGGCCGAGAT CCAGGGCATC GATCCGGACG ATCCGATGTT CCAGTTCTTC
CGCCGCTTCC AGGGCCAGAT CGGCCCGCGC GCCCAGCAGC GCGAAGTGCC GGTGCGCGCG
CAGGGCTCGG GCTTCATCGT GAGCCCCGAC GGCATCATCA TGACCAACGC GCACGTCGTG
AAAGACGCCA AGGAGGTCAC CGTCAAGTTG ACCGACCGGC GCGAATACCG CGCGAAGGTG
CTCGGCGCCG ACGCCAAGAC CGACATCGCG GTGCTCAAGA TCGATGCCAG GAACCTGCCC
ACGCTCGCGC TCGGCAACAC CAAGGACCTG AAGGTCGGCG AATGGGTGCT GGCCATCGGC
TCGCCCTTCG GCTTCGAGAG CACGGTGACG GCCGGCGTCG TGAGCGCCAA GGGCCGCTCG
CTGCCCGATG ACAGCTACGT GCCGTTCATC CAGACCGACG TCGCGGTGAA CCCCGGCAAC
TCCGGCGGCC CGCTGCTGAA CACGCGCGGC GAAGTGGTCG GCATCAATTC GCAGATCTAC
AGCCGCAGCG GCGGCTACCA GGGCGTGTCG TTCGCCATTC CGATCGACGT GGCGGTGCAG
GTGAAGGACC AGATCGTCGC GACCGGCAAG GCCACGCATG CGCGCCTTGG CGTGGCGGTG
CAGGAAGTGA ACCAGGCCTT TGCCGACTCC TTCAAGCTGG ACAAGCCCGA GGGCGCGCTG
GTCTCCAACA TCGAGAAGGG CGGCCCCGGC GACAAGGCCG GCCTGAAGGC GGGCGACGTG
ATCCGCAAGG TGGACGGCCA GCCCATCGTC TCGTCGGGCG ACCTGCCTGC GGTCATCGGG
CAGCAGACGC CGGGCAAGAA GGTCACGCTC GAAGTCTGGC GCCAGGGCGA GCGGCAGGAG
CTTTCGGCCA AGCTCGGCGA TGCGAGCGAC AAGCCCGCGC AGGTCGCCAA GAACGAGAGC
GCGGCGGGGC AGGGCAAGCT CGGCCTTGCG TTGCGGCCGC TGCAGCCGCA GGAAAAGCGC
GAAGCCGCCA TCGAGAACGG GCTGCTCGTC GAGGATGTGG CGGGCCCGTC CGCCATGGCC
GGCGTGCAGG CGGGCGATGT GCTGCTGGCC ATCAACGGCA CGCCCGCCAG GAGCCTGGAG
CAGGTGCGCG AGGTGGTGGC CAAGGCCGAC AAGTCGGTCG CGCTCTTGAT CCAGCGCGGC
GAAGACAAGA TCTTCGTGCC GGTGCGGATC GGGTGA
 
Protein sequence
MNTRLTSPHA LVLALATAGV IGAVGAGAYT SARAVNAPTT NATSVAPAAM VTLPDFSTIT 
SRDGPAVVNI SVTGTAKASE DQAAAEIQGI DPDDPMFQFF RRFQGQIGPR AQQREVPVRA
QGSGFIVSPD GIIMTNAHVV KDAKEVTVKL TDRREYRAKV LGADAKTDIA VLKIDARNLP
TLALGNTKDL KVGEWVLAIG SPFGFESTVT AGVVSAKGRS LPDDSYVPFI QTDVAVNPGN
SGGPLLNTRG EVVGINSQIY SRSGGYQGVS FAIPIDVAVQ VKDQIVATGK ATHARLGVAV
QEVNQAFADS FKLDKPEGAL VSNIEKGGPG DKAGLKAGDV IRKVDGQPIV SSGDLPAVIG
QQTPGKKVTL EVWRQGERQE LSAKLGDASD KPAQVAKNES AAGQGKLGLA LRPLQPQEKR
EAAIENGLLV EDVAGPSAMA GVQAGDVLLA INGTPARSLE QVREVVAKAD KSVALLIQRG
EDKIFVPVRI G