| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2386 |
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| Symbol | |
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| ID | 7970429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2550065 |
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| End bp | 2551540 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792968 |
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| Product | protease Do |
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| Protein accession | YP_002944279 |
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| Protein GI | 239815369 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.444921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCC GACTGACTTC CCCCCATGCC CTGGTGCTTG CCTTGGCGAC CGCCGGGGTC
ATCGGTGCCG TCGGTGCCGG CGCCTACACC AGTGCCCGCG CCGTGAATGC GCCGACCACC
AACGCCACGA GCGTGGCGCC CGCGGCCATG GTGACGCTGC CCGACTTCTC CACCATCACT
TCGCGCGACG GTCCCGCGGT GGTCAACATC AGCGTGACGG GCACCGCCAA GGCGTCCGAG
GACCAGGCCG CGGCCGAGAT CCAGGGCATC GATCCGGACG ATCCGATGTT CCAGTTCTTC
CGCCGCTTCC AGGGCCAGAT CGGCCCGCGC GCCCAGCAGC GCGAAGTGCC GGTGCGCGCG
CAGGGCTCGG GCTTCATCGT GAGCCCCGAC GGCATCATCA TGACCAACGC GCACGTCGTG
AAAGACGCCA AGGAGGTCAC CGTCAAGTTG ACCGACCGGC GCGAATACCG CGCGAAGGTG
CTCGGCGCCG ACGCCAAGAC CGACATCGCG GTGCTCAAGA TCGATGCCAG GAACCTGCCC
ACGCTCGCGC TCGGCAACAC CAAGGACCTG AAGGTCGGCG AATGGGTGCT GGCCATCGGC
TCGCCCTTCG GCTTCGAGAG CACGGTGACG GCCGGCGTCG TGAGCGCCAA GGGCCGCTCG
CTGCCCGATG ACAGCTACGT GCCGTTCATC CAGACCGACG TCGCGGTGAA CCCCGGCAAC
TCCGGCGGCC CGCTGCTGAA CACGCGCGGC GAAGTGGTCG GCATCAATTC GCAGATCTAC
AGCCGCAGCG GCGGCTACCA GGGCGTGTCG TTCGCCATTC CGATCGACGT GGCGGTGCAG
GTGAAGGACC AGATCGTCGC GACCGGCAAG GCCACGCATG CGCGCCTTGG CGTGGCGGTG
CAGGAAGTGA ACCAGGCCTT TGCCGACTCC TTCAAGCTGG ACAAGCCCGA GGGCGCGCTG
GTCTCCAACA TCGAGAAGGG CGGCCCCGGC GACAAGGCCG GCCTGAAGGC GGGCGACGTG
ATCCGCAAGG TGGACGGCCA GCCCATCGTC TCGTCGGGCG ACCTGCCTGC GGTCATCGGG
CAGCAGACGC CGGGCAAGAA GGTCACGCTC GAAGTCTGGC GCCAGGGCGA GCGGCAGGAG
CTTTCGGCCA AGCTCGGCGA TGCGAGCGAC AAGCCCGCGC AGGTCGCCAA GAACGAGAGC
GCGGCGGGGC AGGGCAAGCT CGGCCTTGCG TTGCGGCCGC TGCAGCCGCA GGAAAAGCGC
GAAGCCGCCA TCGAGAACGG GCTGCTCGTC GAGGATGTGG CGGGCCCGTC CGCCATGGCC
GGCGTGCAGG CGGGCGATGT GCTGCTGGCC ATCAACGGCA CGCCCGCCAG GAGCCTGGAG
CAGGTGCGCG AGGTGGTGGC CAAGGCCGAC AAGTCGGTCG CGCTCTTGAT CCAGCGCGGC
GAAGACAAGA TCTTCGTGCC GGTGCGGATC GGGTGA
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| Protein sequence | MNTRLTSPHA LVLALATAGV IGAVGAGAYT SARAVNAPTT NATSVAPAAM VTLPDFSTIT
SRDGPAVVNI SVTGTAKASE DQAAAEIQGI DPDDPMFQFF RRFQGQIGPR AQQREVPVRA
QGSGFIVSPD GIIMTNAHVV KDAKEVTVKL TDRREYRAKV LGADAKTDIA VLKIDARNLP
TLALGNTKDL KVGEWVLAIG SPFGFESTVT AGVVSAKGRS LPDDSYVPFI QTDVAVNPGN
SGGPLLNTRG EVVGINSQIY SRSGGYQGVS FAIPIDVAVQ VKDQIVATGK ATHARLGVAV
QEVNQAFADS FKLDKPEGAL VSNIEKGGPG DKAGLKAGDV IRKVDGQPIV SSGDLPAVIG
QQTPGKKVTL EVWRQGERQE LSAKLGDASD KPAQVAKNES AAGQGKLGLA LRPLQPQEKR
EAAIENGLLV EDVAGPSAMA GVQAGDVLLA INGTPARSLE QVREVVAKAD KSVALLIQRG
EDKIFVPVRI G
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