| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2367 |
|---|
| Symbol | |
|---|
| ID | 7970410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2528985 |
|---|
| End bp | 2529551 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644792949 |
|---|
| Product | RNA polymerase factor sigma-70 |
|---|
| Protein accession | YP_002944260 |
|---|
| Protein GI | 239815350 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCCACTG AACAAGAACT TTCCGACTTT CTGAAGAGCG TCGAACGGCG CGCTTTCAAG
CGCTCGGTCT ACCACGTGCG GGACGAGGAA GCCGCGCTCG ACATCGTGCA GGACAGCATG
ATGAAGCTGG CGCAGCACTA CGGCGACAAG CCGCCGGAAG AGCTGCCGAT GCTGTTCCAG
CGCATTCTTT CGAATTGCAC CCTCGACTGG TTCCGCCGTC AGAAGACCCG CCGCGCCCTG
TTCTCCAACC TCGGCGACTT CGAATCTGCC GGAGACGACG GAGATTTCGA TCTGCTGGAG
AACTTCGTCT CGCCAACCGA CTCCAGAGAA ACGGAGAGTG CCGAGGACAC GACCCGCCGC
GCCCAGATCT TCCACGAGAT CGAAGAACAG ATCGCGGCTT TGCCAGGTCG TCAACGCGAG
GCTTTCCTGA TGCGTTACTG GGAAGAAATG GATGTGGCGG AGACGGCCGC TGCAATGGGC
TGCTCCGAAG GCAGCGTCAA AACCCATTGT TCGCGGGCCG TGCACGCCCT GAGCAAGGCG
CTCAAAGCCA AGGGAATTTC GCTATGA
|
|---|
| Protein sequence | MATEQELSDF LKSVERRAFK RSVYHVRDEE AALDIVQDSM MKLAQHYGDK PPEELPMLFQ
RILSNCTLDW FRRQKTRRAL FSNLGDFESA GDDGDFDLLE NFVSPTDSRE TESAEDTTRR
AQIFHEIEEQ IAALPGRQRE AFLMRYWEEM DVAETAAAMG CSEGSVKTHC SRAVHALSKA
LKAKGISL
|
|---|
| |