| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2288 |
|---|
| Symbol | |
|---|
| ID | 7971143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2429404 |
|---|
| End bp | 2431626 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644792870 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002944183 |
|---|
| Protein GI | 239815273 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGCA CGGCCGGCGA GATCGATCAC GATTTCGATG CGATATTGCA GATTCACCAG
AACGGTCTTC TGGACCAAGC GGAGGCCGGC TATCAAAAAA TCTTGAGCCG TGCTCCGCGC
CATCATCCGA GCCTCGGGAT GCTCGCGATC CTGGGCATTC AGAGAAACCG TCCCGACGAA
GCGTTGCACT ACGCCGATCT CGCGATTGCC ATCGAACCGC GCATCTCGAA TACCCATGCA
ACTCGCGGCA ACGCCTTGCA TGGACTGAAG CGCTACGAAG AAGCGGCGCA GGCCTATCAA
GTGGCGTTGA CCCTGAATCC GGACGGGCAC GACGTTCTGA CCAATCTTGC GAACGCATGG
AAGCGGCTGG GTCGCTTCGA GCGGGCAATG CAATGCTATG ACCGCGCATT GGCAATGTGC
CCGAGCTCGA TCGATACGCG CTACAACCGC GGCGTGGCAC TGCTCGAGAA AGGGCGGCAT
GCGGAAGCAC TGGATGATTT TGATGCCGTA CTGGCCAGAT CGAGTGATGA CCTCGACGCC
TTGTGCCAGC GCATCTACGC GCTATGCGGC CTGCAACGCC ATCAGGAAGC CTTGGCCGAA
AGCAACCATG CAATCGCTCG CCATCCATCG TCCGCGGATG CCTGGAGAGC CCACGGCCAC
GTGCTCCTGG GAATGGGGAA CTCCCTGCAG GCCGCACAAG CGTTCGAGCG CGTGATCGAT
CTTGGCGGAC CGTCGTCGAG CGCTCGTGGT GAAGACCACT TTCTTGCCGC GCGCGCACTC
GTCGGGGGAA GCCGACATGA AGAAGCGTTC CTTCATCTCG AACGGGCCCT GAAATCCGAT
CCTGTGCCGG CTTACGCAGC AGGAGACCAT TTCCTTGGCA TGGCCCAAAC GCTGCGCTGG
CGCGACTTCG ACCAGGTCAA GGCCCGTCTG TGCGAGGCCG TGAGGCGGGG CGAGTCGGCC
GCCACGCCAT TTGTCATGGC GGTCGGGTGC GACGACCTCG ACGTGATCCG CCGGGCGGGC
GCGACGTTCA TCGCGGACTT TGTCCCGGAT GCCGAGCCGT TGCCGCTGTC CGAACGCACC
AGCCACGAGA GGATTCGCCT GGGCTATTTT TCTGCGGATT TCCACGCGCA TGCGACCACG
CTGCTGATCG CCGAGCTTCT TGAAAAGCAT GATCCCGCGA AATTCGAAGT GTTCCTCTTT
TCTTTCGGGC CGTCGACTTC CGACGACATG ACGGAGCGCC TGTCCCGATC GGTGGACCAC
TTCTTCGACG TCTCCGAGGC GTCGGACAGC GCGATCTGCG CCTTGTCCCG CAGACTGGAG
ATCGACATCG CGATCGACCT GAAGGGCTAC ACACAGAGCT GCCGCCCGCG GATCTTCGCC
GGTCGTGCCG CCCCGGTGCA AGTCAACTAT CTGGGCTATC CCGCCAGCAT GGGGGCCACA
TTCATCGACT ACATCGTGGG CGATGCGGTC GTGACGCCGC CGGAACATGC GTCCTTCTAC
ACCGAGCAGA TCGTCACCCT GCCCCACTGC TATCAACCGA ACGCTCCCGG CTTGCGTTTG
ATCGCGCCGA TGCGCATGGA CAGGGCGAGC GCCAGGATGG CAGCCGGCCT TCCCGCGAGC
GGGTTCGTCT TCTGTTGCTT CAACAATACC TACAAGATCA CTCCGACGGT TTTCGCCACG
TGGATGCGAA TCCTGCGTGC GGTCCCCGAC AGCGTGCTCT GGCTGTACGA AACCGACAGC
CGTGTCGGGC CCAGACTGCA GGAAGAGGCC GTGAAGAACG GCATTGAACC CGGACGGCTG
GTCTTCGCGC CGCGCCAGCC CTTGGGCGAG CATCTCTGTC GGCACGAGCT GGCGGATCTG
TTCCTGGACA CATTCCCCTG CAATGCCCAC ACCACGGGAA GCGACGCGCT CTGGGCAGGC
TTGCCTCTGC TCACGTGCCT CGGAACCACG TTTGCGAGCC GCGTTGCCGC CAGCCTGCTC
CATGCCGTCG GGTTGCCGGA AATGGTGATG CCCACTCTCG ACGCGTATGC GACAAGGGCC
ATCGAGTTGG CCAGCGAACC CGATGAACTC CTGCGTCAAA GAGAGCATCT GCGCCAGGCA
AGGAGGGATG CACCATTGTT TGATATCGAC CGGTATCGAT GCGGCATCGA AGACGCGTAT
CGAATGATGT GGGAGCGCTA CATGAGATGC GAGCCACCGA TGCCCCTCGT TGTTCCGGGA
TGA
|
|---|
| Protein sequence | MAGTAGEIDH DFDAILQIHQ NGLLDQAEAG YQKILSRAPR HHPSLGMLAI LGIQRNRPDE
ALHYADLAIA IEPRISNTHA TRGNALHGLK RYEEAAQAYQ VALTLNPDGH DVLTNLANAW
KRLGRFERAM QCYDRALAMC PSSIDTRYNR GVALLEKGRH AEALDDFDAV LARSSDDLDA
LCQRIYALCG LQRHQEALAE SNHAIARHPS SADAWRAHGH VLLGMGNSLQ AAQAFERVID
LGGPSSSARG EDHFLAARAL VGGSRHEEAF LHLERALKSD PVPAYAAGDH FLGMAQTLRW
RDFDQVKARL CEAVRRGESA ATPFVMAVGC DDLDVIRRAG ATFIADFVPD AEPLPLSERT
SHERIRLGYF SADFHAHATT LLIAELLEKH DPAKFEVFLF SFGPSTSDDM TERLSRSVDH
FFDVSEASDS AICALSRRLE IDIAIDLKGY TQSCRPRIFA GRAAPVQVNY LGYPASMGAT
FIDYIVGDAV VTPPEHASFY TEQIVTLPHC YQPNAPGLRL IAPMRMDRAS ARMAAGLPAS
GFVFCCFNNT YKITPTVFAT WMRILRAVPD SVLWLYETDS RVGPRLQEEA VKNGIEPGRL
VFAPRQPLGE HLCRHELADL FLDTFPCNAH TTGSDALWAG LPLLTCLGTT FASRVAASLL
HAVGLPEMVM PTLDAYATRA IELASEPDEL LRQREHLRQA RRDAPLFDID RYRCGIEDAY
RMMWERYMRC EPPMPLVVPG
|
|---|
| |