| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2278 |
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| Symbol | |
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| ID | 7971133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2420858 |
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| End bp | 2422045 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644792860 |
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| Product | protein of unknown function DUF1078 domain protein |
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| Protein accession | YP_002944173 |
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| Protein GI | 239815263 |
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| COG category | [N] Cell motility |
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| COG ID | [COG1749] Flagellar hook protein FlgE |
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| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.345323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAAT CCATCTATGT CGGAATGACC GGACTGCTGG GCTATTCGCG CGGACTGCGC
GTCATTGCCA ACAACACGGC CAACATCAAC ACGCCGGGCT TCAAGAGCTC CAGCCTCCAG
TTCGCCGACA TGTTCTACAG CGGCGGCAAT CTGGGTGGCG GCAGCACCAG CCAGAACCGG
GACCAGGTCG GCTTTGGCCT CAGCACGGCC GGAACGTCGC TGTCGTTCAA GCAGGGCGAG
TTGCGCCAGA CCGGCAACGA CCTGGACATG GCCGTCGATG GCCAGGGCCT GTTTGCGCTG
CAGGACGCAA ACGGGAAGAC CACCTACACG CGGGCCGGCC AGTTCAAGTT CGATGCCGAC
GGCACGCTGG TGAGCCGGGT CAACGGCGAG AAGGTCATGG GTCTGGACGA CCGCGGCGGC
CTGGTGGCCA TCACCCTGGC GGGCCAGATG ATGAGCCTGG GCCGTCCCAC GTCCCGCGTG
GAGTTCTCGG GCAACCTCTC GAACACGGTC ACCGAGCAGA CCATCGGCGG CATCGCCGTC
GTGGATGCCA GCGGTGCCAG CCACACGCTG ACCATGAAGT TCTCGGTCGT CAGTGCGGCC
CAGAGCGGCA CCACGATGAA GGTCGAGCTC ATGGAAGGCA CCACGGTCGT GAGCACCGGG
CAGATGGTGT TTGTCGGCGG AAAGCCCACA CCCGAGACCG CGAAGTTGCA AGCGGCCTAT
GCCCCGGCGG GGCAGCCACC GATGGCGTTG ACGCTGGATT TCAGTTCCGA CGTCGTTCTT
TTTGCGGGGC AGACCTCGCT CAAGGTCGAT TCGCAGGACG GCATCGGCCC GGGCGCGCTG
AGCGGCACCA CGTTCGATGC CGACGGAAAC CTCACGCTGA ACTATTCGAA TGGTTCGACC
GTCAAGGGTG CGCGCCTGGC CCTTGCGCGC TTCGACTCGC CCGACGCCGT GGGATCGCTG
GGCGACAACC AGTTCGAACA GCTGGACGAG AACGCGTGGC ACCTGGGCGT GGCGGGCGAA
GGCGCCTTTG GCAAGGTTAG CGCCGGGCGG GTCGAGATCT CGAACGTCGA CCTGTCGCAG
GAATTCAGCG ACCTGGTGAT CATGCAGCGC GGCTACCAGG CCAGTTCGCA AATCATCTCG
ACGGCCAACG ACATGCTGCA GGAACTGTTC TCGATGAAGA GCAAATGA
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| Protein sequence | MLESIYVGMT GLLGYSRGLR VIANNTANIN TPGFKSSSLQ FADMFYSGGN LGGGSTSQNR
DQVGFGLSTA GTSLSFKQGE LRQTGNDLDM AVDGQGLFAL QDANGKTTYT RAGQFKFDAD
GTLVSRVNGE KVMGLDDRGG LVAITLAGQM MSLGRPTSRV EFSGNLSNTV TEQTIGGIAV
VDASGASHTL TMKFSVVSAA QSGTTMKVEL MEGTTVVSTG QMVFVGGKPT PETAKLQAAY
APAGQPPMAL TLDFSSDVVL FAGQTSLKVD SQDGIGPGAL SGTTFDADGN LTLNYSNGST
VKGARLALAR FDSPDAVGSL GDNQFEQLDE NAWHLGVAGE GAFGKVSAGR VEISNVDLSQ
EFSDLVIMQR GYQASSQIIS TANDMLQELF SMKSK
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