| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2263 |
|---|
| Symbol | |
|---|
| ID | 7969977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 2408997 |
|---|
| End bp | 2409776 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644792845 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002944158 |
|---|
| Protein GI | 239815248 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG4786] Flagellar basal body rod protein |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.452182 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG TACTCGCCAT CAGCCTGAAC AGCATGCAGC AGGACATGGC GCGCCTGGAG
CGCATCAGCA TGAACATGGC CAACGCCACC ACGCCCGGCT ACAAGCGCGA GGTCGCGAGC
TCGCTGCAGG TGGGGGCGGG GGCGTTTTCG GACGCGTTGC GCGAAGCGCG GGCGAGCACC
CTGGCTGGAA GAGCGGCAGG TTCTCCCGCA GCAGGCACCC TGCTCGTGCA GACCGATGCG
CGGCCGGGCA GCCTCAAGTC GACTGGCCAA AGCCTCGATG TGGCATTGAC CGCAGCGGGG
TTCTTCGAGG TTTCGACCGA CGCCGGCCTG GCCTATACGC GGCAGGGGAG CTGGCAGCTC
GATGCGCGCG GGCGCCTTGT TACGGCGCAG GGCCATCCCG TCATGGGCGT GGGCGGCGAG
ATTGTGCTGA GTCGTCCCAA CCCCGTCATC GATGCCAGCG GCCAGGTGTT CGAAAGCAAG
CCCGGAGGCG GAGCGGAGTC GACGCCGGTC GGGCAGCTCA AGGTGGTTCG CTTCGAGAAC
ACCGACGACT TCCAACGCAT GGGCGGCGGA CTGATGCGCA CGGAGCAGCA GCCCGCACAA
GTGGCAGAAG CCGATGTCCA GCTCCGCCAG GGCTTTGTCG AGAACTCCAA CGTGAGCTCC
ATGCAGGAAA TGGCGCAGCT GATCCAGTCG ATGCGGCATT TCGAATCGAT GCAGCGCGTG
GCGCTGGGCT ACGACGAAAT GATCGGTGGG GCGGTGCGCA AGCTCGGCGA GCTCTCGTAA
|
|---|
| Protein sequence | MSDVLAISLN SMQQDMARLE RISMNMANAT TPGYKREVAS SLQVGAGAFS DALREARAST
LAGRAAGSPA AGTLLVQTDA RPGSLKSTGQ SLDVALTAAG FFEVSTDAGL AYTRQGSWQL
DARGRLVTAQ GHPVMGVGGE IVLSRPNPVI DASGQVFESK PGGGAESTPV GQLKVVRFEN
TDDFQRMGGG LMRTEQQPAQ VAEADVQLRQ GFVENSNVSS MQEMAQLIQS MRHFESMQRV
ALGYDEMIGG AVRKLGELS
|
|---|
| |