| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2244 |
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| Symbol | |
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| ID | 7969958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2389385 |
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| End bp | 2391751 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644792831 |
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| Product | type III restriction protein res subunit |
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| Protein accession | YP_002944144 |
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| Protein GI | 239815234 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4951] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.450731 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGACC GCGATGAACT CACCAAGCTG CGCGCGGAGA ACAGCCGGCT GATCGCGCTG
CTCGAATCCC ACGGCATCGA ATGGCGGACG CGGCAGCAGC CGTCCCCATC GCCCGTCGAG
CCATCGAGAC TGTCCACTGA CGAGAAGGTC GCTATCTTCC GACGGCTCTT CCGCGGTCGT
ACCGATGTGT TTCCCGTCCG ATGGGAGAGC AAGACCACCG GCAAGTCGGG CTACGCGCCG
GCTTGCGCGA ATGAGTGGCG CACCGGGGTG TGCGAGAAGC CGCGCATCAA GTGCGGAGAC
TGCGGCAATC GTCTGCTCGT CCCGCTGTCG GACGCGGTGA TCTACAAGCA CCTGGCTGGC
GAGCATACGG TCGGGGTGTA TCCGCTGCTG GAGGACGACA GCTGTCATTT CCTGGCCGTC
GACTTCGACG AGGCCGAATG GCGGGACGAT GCGCAGGCGT TCATGCAGTC TTGCGCGGGG
CTGGGCGTGC CAGCAGCGCT GGAGGTCTCG CGCTCCGGCC AAGGCGCCCA TGCCTGGGTG
TTCTTTGCTG CTCGCGTGTC GGCGCGCGAT GCCCGCCGCC TCGGCACAGC CATCATCAGC
CACACCTGCG CGCGCACGCG GCAGCTCCGG CTCACTTCCT ACGACCGACT GTTTCCGAAT
CAGGACACGA TGCCCAGAGG CGGCTTTGGT AACCTGATCG CCTTGCCCCT GCAGAAGGGG
CCGCGCGAAA GGGGCTACAG CGTCTTCGTC GACGCCGAGC AGCGCCCCTA CCCGGACCAG
TGGGCGTTCC TGGCCTCCCT CCAGCCGATG GCCGCACACG ACATCGAGCC GACCATCCTG
CGGGCCACGA GTGGCATTCA TCCGTTGGAT ATCACCTTCA TTGATGACGA GGATCTGGCC
ACGCCCTGGA AACGCGAAAG CACAGCGTCG AAGAAGTTGC CGGGAACCAT GCCCCGCTCG
CTGACGATGA CCGTGGCCAA CCTGATCTAC TTCGAGAAGG CGCAACTGCC TCAGCCGCTC
GCCAATCGAC TGATCCGTCT GGCGGCGTTC CAGAACCCCG AGTTTTACAA GGCACAGGCG
ATGCGGGTGT CGGTGTGGGA CAAGCCACGG GTCATCGGCT GCGCCGAGAA CTACCCGCAA
CACATCGCCT TGCCTCGCGG GTGTCTGGAT GCCTCCCTGT CGCTGTTGCG CGAGAACGGC
ATCACGTGTG AGCTGCGAGA CGAGCGCTTC AAGGGCCAGC CGCTGGACGT GTCGTTCGTC
GGCAATCTGC GTCAAGACCA GCAGACCGCC GTCGCTGCGA TGCTGCCGTT TGATGCCGGG
GTGCTGTGCG CACCGACCGC CTTTGGCAAG ACAGTCACCG CCGCGGCGAT GATCGCCGAG
AAAGGCGTCA ACACGCTGAT ACTGGTGCAT CGCACGGAAC TGTTGAAGCA ATGGCAGGAG
CGGCTGCAGA CCTTTCTGGG CGTCGGTACG GGCGTGGTCG GCACCATTGG CGGCGGCAAG
GCCAAACCGA CCGGCAGGAT CGACATTGCC GTGATGCAGT CTTTGTCCCG CCGGGGTGAG
GTGAACCCGC TGGTCGAGGA CTACGGCCAC GTGATCGTCG ACGAGTGCCA CCACGTCGGC
GCGGTTTCGT TCGACGCCAT CCTGAAGCGG ACCAAGGCGA AATACGTGCT CGGCCTGACC
GCCACGCCGT TCCGACGCGA CGGGCAGCAG CCGATCATCT TCATGCAGTG CGGGCCGATC
CGTCACACGG CGGCCACGCC GGCCGGGGCG CCGCACGATC TGGAGGTGGT GCCGCGGTCC
CGCCATGCCC GGATCGATTT GCCGCAAGAT GCCGGCATCC AGAATGTATT CCGGCATCTG
GCGAACGATC AGGCGAGGAC TGAAGCCATC GCAGCCGAGG TGCGCGATGC CTTCGCGCAG
GGGCGCAAGA TACTGGTGCT GACGGAGCGC ACGGAACATC TCAACGCGAT TGAAGCAGCC
CTCGGTGGCC TGGGGCCGGA CTTCTTCGTA CTGCATGGCC GGATGTCCAG AAAGCAGCGT
GCGGCGCTGG TGGCAGGCCT TGATGCGTTG GCGCCCGACG CACCGCGGGT CCTCCTGGCG
ACCGGCAAGT TGGTTGGCGA GGGCTTCGAC CACCCGCCGT TGGACACGCT GGTGCTCGCC
ATGCCGGTGT CCTGGAAAGG GACGCTGCAG CAGTACGCCG GCCGCCTGCA CCGGGAGCAC
GTCAGCAAGG CCGACGTGCG GATCATCGAC TTCGTGGACA CCGGCCATCC GGCGTTGCTG
CGTATGTGGG ATAAGCGTCA GCGCGGATAC CGAGCGATGG GATATCGGAC CGACGCCGAT
ACCGTGCCGA ATGAAGGCCT GTTTTGA
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| Protein sequence | MADRDELTKL RAENSRLIAL LESHGIEWRT RQQPSPSPVE PSRLSTDEKV AIFRRLFRGR
TDVFPVRWES KTTGKSGYAP ACANEWRTGV CEKPRIKCGD CGNRLLVPLS DAVIYKHLAG
EHTVGVYPLL EDDSCHFLAV DFDEAEWRDD AQAFMQSCAG LGVPAALEVS RSGQGAHAWV
FFAARVSARD ARRLGTAIIS HTCARTRQLR LTSYDRLFPN QDTMPRGGFG NLIALPLQKG
PRERGYSVFV DAEQRPYPDQ WAFLASLQPM AAHDIEPTIL RATSGIHPLD ITFIDDEDLA
TPWKRESTAS KKLPGTMPRS LTMTVANLIY FEKAQLPQPL ANRLIRLAAF QNPEFYKAQA
MRVSVWDKPR VIGCAENYPQ HIALPRGCLD ASLSLLRENG ITCELRDERF KGQPLDVSFV
GNLRQDQQTA VAAMLPFDAG VLCAPTAFGK TVTAAAMIAE KGVNTLILVH RTELLKQWQE
RLQTFLGVGT GVVGTIGGGK AKPTGRIDIA VMQSLSRRGE VNPLVEDYGH VIVDECHHVG
AVSFDAILKR TKAKYVLGLT ATPFRRDGQQ PIIFMQCGPI RHTAATPAGA PHDLEVVPRS
RHARIDLPQD AGIQNVFRHL ANDQARTEAI AAEVRDAFAQ GRKILVLTER TEHLNAIEAA
LGGLGPDFFV LHGRMSRKQR AALVAGLDAL APDAPRVLLA TGKLVGEGFD HPPLDTLVLA
MPVSWKGTLQ QYAGRLHREH VSKADVRIID FVDTGHPALL RMWDKRQRGY RAMGYRTDAD
TVPNEGLF
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