| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2161 |
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| Symbol | |
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| ID | 7973848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2303739 |
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| End bp | 2306279 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792749 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_002944062 |
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| Protein GI | 239815152 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.145258 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTTTTT CCTCTCCGCT GGCGGTTGCC CGCAGCGCCG TGAATGCGTC TCCGCTCTCG
TGGTGGCGCC GCTGGTGGCG CCAGCAAACG CCGGTGCTGC AAGACGCGGT CGCCATGCTG
GCGCCGATTG CGGCGGTGCT GCTGTTCCTG GCGGCCATCG TGTCGGCGTT CTGGTACCTG
CGCACCGAGG AAGTCGAGCG CGAGCAGGAA TCCGTGCGGC GCGATGTCGA ATACGCGCAG
CAGCGCATGC GCCTGCGCCT GCTCGAGCGC CAGGAACAGC TGATGCGCAT CGCGCGCGAC
GCCTCCAACC GCGAGATCGA CCCGATCGAA TTCGCGAGCC GCGCGGAATC GCTCGTGAGC
CAGTTCCCCG AGCTGCAGAC CGTCACCTGG ATCGACGACC GGCGCCGCTT CAAGGCCGGC
TATTCGGCGC CGAGCGTGCA TCCCGCGCAG CAGCACCTGA TCGGCGACGT GCTGCGCCCG
GGCGACGTGG AGAGCAACTA CGCCCTGGCC CGCGAGCTGC GCCAGCCGGT TTTCTCCCAG
CCGGTGGCGG GCAGCGATCC CGCGGCAATG CTGCAGCTGC ACATTCCGCT CTTCGACCAG
GGCCTGTTCG CGGGCGTGGT GCTGGGCGAG TTTTCGGTCG ACGGCCTGCT GCGCTACGGC
ATGCCCTCGG AAGTGCAGGC GCGCTACGCG GTCTCGCTGC TCGACGCCAA GGGCAACGTG
CTCGCGGGCA ATACGGCCAA CCTGAGGGAA GGCGGCACGC GGCTCCTCCC CTGGCCCGAA
AGAACCAATG AGTACGAAGT GCCGGTGTCG CCCGTCGGCA ATGCACTGGT GTTGCGCGCA
CAGGCCTACC GCACCTCGCA GGGGGTGGTC GGCAACGGAC TGTTCTGGCT GGTCTGCGCG
CTCAGCGTGC TGACCAGCTG GATGCTGATC GGCACCTGGC GCCACACCCG GCGGCGCCAG
CAGGCCCAGC AGCGGCTGGT TGCCGAGACC AACTTCCGCC GCGCGATGGA AAACTCCATG
CTCACCGGCA TGCGCGTGCT CGACCTGCAG GGCCGCATCA CCTACGTGAA CGCCGCCTTC
TGCGCAATGA CGGGCTGGAG CGAAGCCGAG CTGGTGGGCC AGTCGCCGCC CTTCCCCTAT
TGGCTGGAGT CGGACCGCGA AGTGATGAAC GAGCGGCTCG AGGAAGAACT GCACGGGCGC
GCCCTGCCCG GCGGCTTCCA GGTGCGCGTG AAGCGCAAGA ACGGCAGCGT GTTCAACGCC
CGGCTCTATG TGTCGCCGCT GATCGACGCG CGCGGCCACC AGACCGGCTG GATGACGTCG
ATGACCGACA TCACCGAACC CACGCGCATC CGCGAGCAGC TGTCGGCTTC CTACGAGCGC
TTCACCACGG TGCTGGAGGC GCTCGACGCC GCCGTGTCGG TTGCGCCCAT CGGCAGCGAG
GAACTGCTGT TCGCAAACAA GCTGTACCGG CTCTGGTTCG GCTCCGACAC CGTGGGCCAC
CTGGGCATGG TGGCGCAGGC CGGCGTGCCC ACCTCCAATG CGCACGACGA GGGCCTGGAC
GACGTCGACC CCTACGCCGG CCTGCCGATC GACACCCTGA CCGCCGCCCA GGCTGCCAAC
AACGAGATCT TCGTGCCGCA CCTGGGCAAG TGGCTCGAAG TGCGCTCGCG CTACCTCACC
TGGGTCGACG GCCGGCTGGC CCAGCTGGTG ATCGCCACCG ACATCACGCC GCGGCGCGAC
GCCGAGGAGC AGGCCGCCGC GCAGGCCGAC CGCGCGCAGG CCGCGAGCCG CCTGATCACG
ATGGGCGAGA TGGCCTCCAG CGTGGCGCAC GAGCTCAACC AGCCGCTGAC GGCCATCACC
AACTACTGCA ACGGCATGAT GTCGCGCATC AAGGGGCAGG CCATCGACAC CGAGGCGCTG
CTCGCGGCAC TGGAGAAAAC CTCCAAGCAG GCGCAGCGCG CGGGGCAGAT CATCCAGCGC
ATCCGCTCGT TCGTGAAGCG CAGCGAGCCC AACCGCACCG CCGCCGACGT GTCGACCATG
GTCAGCGAAG CGGTCGAACT TGCGGGCATC GAGCTGCGGC GGCGCAACGT GCGGCTCAAC
CACTACGTGG CCGCGCGGCT GCCGGTGGTG CAGGTGGACC CGATCCTGAT CGAGCAGGTA
ATGGTCAACC TGCTGAAGAA CGCGGCCGAA TCGATCGACA TTGCCGAGCG GCCGCTCGCG
CGCCGCAGCG TCGAACTGCG CGTGCTGCCC AAGGTGATCG AGGGCCACAA CGCCATCGAG
TTCTCGGTGC AGGACACCGG CAAGGGCCTG GCCCCCGAGG TGATGGACCG CCTGTACGAA
GCCTTCTTCT CCACCAAGCC CGAAGGCATG GGCATCGGGC TGAACCTCTG CCGCACCATC
GTGGAGTCCC ACCGCGGCCG GATGCAGGCG GAGAACATCT ACAATGGTCC GGATGTGATC
GGATGCCGTT TTTCCTTCTG GATTCCGGTG TTGGACGCTC CCAGTTCCGT AGCAAGCGAC
GAGGCAAAGG TACCTGCATG A
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| Protein sequence | MPFSSPLAVA RSAVNASPLS WWRRWWRQQT PVLQDAVAML APIAAVLLFL AAIVSAFWYL
RTEEVEREQE SVRRDVEYAQ QRMRLRLLER QEQLMRIARD ASNREIDPIE FASRAESLVS
QFPELQTVTW IDDRRRFKAG YSAPSVHPAQ QHLIGDVLRP GDVESNYALA RELRQPVFSQ
PVAGSDPAAM LQLHIPLFDQ GLFAGVVLGE FSVDGLLRYG MPSEVQARYA VSLLDAKGNV
LAGNTANLRE GGTRLLPWPE RTNEYEVPVS PVGNALVLRA QAYRTSQGVV GNGLFWLVCA
LSVLTSWMLI GTWRHTRRRQ QAQQRLVAET NFRRAMENSM LTGMRVLDLQ GRITYVNAAF
CAMTGWSEAE LVGQSPPFPY WLESDREVMN ERLEEELHGR ALPGGFQVRV KRKNGSVFNA
RLYVSPLIDA RGHQTGWMTS MTDITEPTRI REQLSASYER FTTVLEALDA AVSVAPIGSE
ELLFANKLYR LWFGSDTVGH LGMVAQAGVP TSNAHDEGLD DVDPYAGLPI DTLTAAQAAN
NEIFVPHLGK WLEVRSRYLT WVDGRLAQLV IATDITPRRD AEEQAAAQAD RAQAASRLIT
MGEMASSVAH ELNQPLTAIT NYCNGMMSRI KGQAIDTEAL LAALEKTSKQ AQRAGQIIQR
IRSFVKRSEP NRTAADVSTM VSEAVELAGI ELRRRNVRLN HYVAARLPVV QVDPILIEQV
MVNLLKNAAE SIDIAERPLA RRSVELRVLP KVIEGHNAIE FSVQDTGKGL APEVMDRLYE
AFFSTKPEGM GIGLNLCRTI VESHRGRMQA ENIYNGPDVI GCRFSFWIPV LDAPSSVASD
EAKVPA
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