| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2116 |
|---|
| Symbol | |
|---|
| ID | 7973802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 2258440 |
|---|
| End bp | 2258829 |
|---|
| Gene Length | 390 bp |
|---|
| Protein Length | 129 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644792703 |
|---|
| Product | protein of unknown function DUF1486 |
|---|
| Protein accession | YP_002944017 |
|---|
| Protein GI | 239815107 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3631] Ketosteroid isomerase-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAA TTGATATTGC GAAGAACTAC ATTCACGCGG CGCAATCCGG TGACCAGGCC
CTGCTGGCCA GCCTCATCTC TCCTGATGTT GTCTGGCATC AACCTGGCAA AAACCGGTTT
TCCGGTACGC ATCGCGGAAT GTCCGCAGTC GGGGCAATGC TCGGCGGCAT GATGGAAGTA
TCGGGCGGGA CTTTCACGAT TTCGCGCGCT GATCACTTCA TGGAGAACGG CAGCTGGGTC
GCTATCAACA TTGAGTTCAA AGCTGAGCGC GACGGCATAC AGCTCGACCA AGCGGGAGTG
GATCTTTTGC GCATCGAAAA CGGCCAGATC GTCGAGGTCC GCTTGTTTTC GAGTGATCAA
GCGCTTGAAG ATGCATTCTG GGGAACCTGA
|
|---|
| Protein sequence | MSQIDIAKNY IHAAQSGDQA LLASLISPDV VWHQPGKNRF SGTHRGMSAV GAMLGGMMEV
SGGTFTISRA DHFMENGSWV AINIEFKAER DGIQLDQAGV DLLRIENGQI VEVRLFSSDQ
ALEDAFWGT
|
|---|
| |