| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_2070 |
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| Symbol | |
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| ID | 7972472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2215651 |
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| End bp | 2216640 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792663 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002943977 |
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| Protein GI | 239815067 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.70732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGGA CCATGAATGC CGGAGTGCAC AGGACCCACA CGGCCTGGAG CGGCATCCTG
CTGCGCCGCG GCATCCAGAT CGTCGCGTTG GGTCTGCTGG TGGGCACGGT GTGTTTCTTC
ATGGCCCGCT CTCTGCCGGG CGACATGGCT ACCCGCATTG CCGCGGGACG ATATGGCTAC
GACCTTGTGA ACAACGCGGC GGCCGATGCC GTGCGAATCG AGCTCGGACT CGACCGGCCC
GTGTGGCTCG CACTGCTGCA ATGGTGGGGA GAAATCGCGC GACTCGATCT GGGCACTTCA
TTGGTCACTG GCAATTCGGT GTGGGGCGAA GTGACGCACC AGCTGGGCGC CACCATCGAT
CTGGCGGTCG CTTCCGTGTT CGTGGCAGCC ATCGTCGGCT TGCCGCTGGG GATCTGGTCG
GGCCTGCATG CGGGTGGCTG GATCGACCGG CTCACGCTGG TGCTCGCCGT GGTGCTTCGT
GCCATGCCGC CGTTCCTGCT CGCGGTGCTG CTGATGGTGC TGGTTGCGGT GCAACTCGGC
GCTTTGCCTG TTGCGGGCGA CGACCATGCG GGCAGCCTGC TGTTGCCGGC ACTCACGCTG
GGGCTGGGCC TGGCCGCAGG CCTGGCGCGC GTGACCCGGG CCTCCATGCG CGAAGCGGTA
GCTTCGCCGT CCTTCGAATT CGCGCGCACC AAGGGGTTGT CGGACCGGCA AGCGTTGGTG
CGCCATGGTT TGCGCCAAGC AGCGACGCCG GTGGTTGCCT ATCTCGGCGT ACATGCGGTG
TTTCTTGTGG AGGGAGCGGT CGTGGTCGAA ACCTTGTTCG CCTGGCCTGG GATCGGACAT
GCGCTGGTGC ATGCGGTGTT CGGTCGCGAC GTGCCGATGA TCCAGGGGGC CGCGCTGTGC
ATGGGCCTGT TGTTCGTGGT GTTCAACCTG CTGGTGGATG CGGCTTGCCT CGCGCTCGAC
CCGCGCCGAC GCATGGGGGT GACCGCATGA
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| Protein sequence | MSRTMNAGVH RTHTAWSGIL LRRGIQIVAL GLLVGTVCFF MARSLPGDMA TRIAAGRYGY
DLVNNAAADA VRIELGLDRP VWLALLQWWG EIARLDLGTS LVTGNSVWGE VTHQLGATID
LAVASVFVAA IVGLPLGIWS GLHAGGWIDR LTLVLAVVLR AMPPFLLAVL LMVLVAVQLG
ALPVAGDDHA GSLLLPALTL GLGLAAGLAR VTRASMREAV ASPSFEFART KGLSDRQALV
RHGLRQAATP VVAYLGVHAV FLVEGAVVVE TLFAWPGIGH ALVHAVFGRD VPMIQGAALC
MGLLFVVFNL LVDAACLALD PRRRMGVTA
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