Gene Vapar_2008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2008 
Symbol 
ID7969801 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp2152344 
End bp2152952 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content67% 
IMG OID644792606 
ProductHemerythrin HHE cation binding domain protein 
Protein accessionYP_002943920 
Protein GI239815010 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAACA TCGTCTCCCG GCTCTTTCCC ACGGCGACCA ACATGATTCG CCTGGACCAC 
ACGCACGTGC TCTCCACCTT CCACCAGTAC AAGGCCGGCG CGCCGGAACG GGTGAAGAAA 
GGGCTGGTCA ACACCATCTG CACCGCGCTC GAGATCCATG CGCAGCTCGA GGAAGAAATC 
TTCTATCCCG AGATGCGCAA GGTCTGCGAG GACGACGAAC GCATCACCAA GGCGCTCGAG 
GAGCATTCCG AGATGCGCCG CCTCATCGGC CTGCTTCGCG CCATGGAGCC CGAAGCGCGC 
GACTATGACG AAACCCTCTC GGCGCTGATG CGCGACGTGA TGCACCACGT GGCCGACGAG 
GAAACCATCC TGCTGCCGAC CGCCGAGAAG CTGCTGCCCG ACCGGCTCGG CGAGCTGGGC 
GCGCAGATGA CCAAGCGCCG GCTGCAGCTT GCCGGGCCGC GCACCGGCGA GATCGCGCTC 
GACATGGGCC GTGCGGCATC CGGCAACACG GCCGCCATTG CGATGGTCGG GCTGGCTGCG 
GCCGGGCTGC TGCTCGCGCG GCGTTCCGGC CATCTGCGCT GGCCCCACGC GCACCACGCG 
CGCACCTGA
 
Protein sequence
MTNIVSRLFP TATNMIRLDH THVLSTFHQY KAGAPERVKK GLVNTICTAL EIHAQLEEEI 
FYPEMRKVCE DDERITKALE EHSEMRRLIG LLRAMEPEAR DYDETLSALM RDVMHHVADE 
ETILLPTAEK LLPDRLGELG AQMTKRRLQL AGPRTGEIAL DMGRAASGNT AAIAMVGLAA 
AGLLLARRSG HLRWPHAHHA RT