| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1954 |
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| Symbol | |
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| ID | 7969747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2094142 |
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| End bp | 2095083 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792553 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002943867 |
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| Protein GI | 239814957 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.176573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGA TCGACCGCGT CTTGCGTTCC AACCTCAAGT TGCGCCACCT GCAGATGCTG
GTGGCGCTCG ACCAGTTCCG CCACCTGGGC CGTGCGGCCG AATTCCTGTC GGTCACGCAG
CCGGCGGTGT CCAAGTCGCT GGTGGAAATC GAGCGCATGT TCGGCCTTGC GCTGTTCGAG
CGCTCCACAC GCGGCACCGA GCCCACGCCC TATGGCGAGA GCGTGGTGCG CTTCGCGCGC
TCGGTGCTGG CCGACTACGA CCGCACGCGC GACGAGATCG CCGCCGTGGC CAGCGGCGCC
GCGGGCCGCA CCAGCGTGGG CGCCATGGTG GTGGCCATGC CGGTGCTGCT GGCGCGCGCG
GTCGAGATGC TCAAGGCCAA CTCCTCGCAG ACCACGGTGC TGGTGGAGGA GGGCGACCTC
ACGCGCCTGT TGCCCAAGCT GCGGCTGGGC GAGCTCGACC TGTTCGTCGG GCGGCTGGAG
CCCGGCTACG CCGCGCCCGA CCTCGAGACC GAGGCGCTGC TTGCCGAGCC CATGCAGGCG
GTGGTGCGCC CGGGGCACCC GCTGGCCGCA AAGCGCCGGC TGGGCTGGGC CGACCTGGCC
AGGGAGCACT GCGTGATGCC GCCGCCCTGG GCCTCGTTGC GCGTGAAGCT CGACCAGATG
TTCTTTCGTG ATGGCGTGCA TCCGCCGGCC GACATCATCG AATCGGCCTC GTTCCTCGCG
CAGATCAGCT TCTTGCAGCA GCGCGATGCG GTGGCCTTCA TGGCGCGCTC GGTGGCGCGG
CATTTCCAGC AGCAGGGCAT GCTCAAGGTG CTGGCGCTCA AGGTGCCGAT CGAGCTGCCG
CCGGTGGGCC TCATCACCAT GCGCGGGCGC CGGCGCACGC CCAGCACGCA GCAGCTGATC
GAATGCCTGC GGCGCGCGGC CAAGGCCAGA TCGACAGCTT GA
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| Protein sequence | MSQIDRVLRS NLKLRHLQML VALDQFRHLG RAAEFLSVTQ PAVSKSLVEI ERMFGLALFE
RSTRGTEPTP YGESVVRFAR SVLADYDRTR DEIAAVASGA AGRTSVGAMV VAMPVLLARA
VEMLKANSSQ TTVLVEEGDL TRLLPKLRLG ELDLFVGRLE PGYAAPDLET EALLAEPMQA
VVRPGHPLAA KRRLGWADLA REHCVMPPPW ASLRVKLDQM FFRDGVHPPA DIIESASFLA
QISFLQQRDA VAFMARSVAR HFQQQGMLKV LALKVPIELP PVGLITMRGR RRTPSTQQLI
ECLRRAAKAR STA
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