| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1949 |
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| Symbol | |
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| ID | 7969742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2088082 |
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| End bp | 2089137 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644792548 |
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| Product | transcriptional regulator, LacI family |
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| Protein accession | YP_002943862 |
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| Protein GI | 239814952 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.987558 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGGATA ACCCTTCACC TCCTGCCGAT GCGCGGCGTG CGCGCGTGGT CGACATCGCG
CGGGCCGCGC AGGTGTCGAC CGCCACAGTC GACCGCGTGC TCAACCGCCG CCCCGGCGTG
CGCGACGCCA CGGTGCAGCG CGTGCTCAAG GCCGCGGGCG AGCTCGACTA CCTGCCGGGC
CCCGAGCTCT ATGCCGCGCT CACGCCGCCG CCGCTCAGGC TGGTGTTCCT GCTGCCGGCC
GGGACCAACC GCTTCATCCG CATGCTGGGC GACATGGTGG GCTATTCACA GGAGCACTGG
GCGCCGTTCA ACGTGCAGTG CCGCACCGTC TTCATCGAGA GCTTCAATCC GCACGAGCTG
GCGGACGCGT TGCGCAAGCA TGGCCAGCGT TGCGACGGCA TCGCGATGAT GGCGCTGGAG
CACCCGGCGG TGCGCGAGGC GGTGGCGGCG CTGGCGGCGC GCGGGCTGCC GGTGGTCACG
CTGATCTCCG ACCTGTCGAA CTCCGAGCGC GCCGCCTTCG TGGGGCTGGA CAACCGCGCG
GCCGGCCGCA CCGCGGGCTA CCTCATCGGC CGCTTCATCG GTGCGCGCGC CGCAAAGGTC
GCGCTCATCG CGGGCAGCCT GAGCTACAAG GCCCATGAAG AGCGCGAGGC CGGCTTCCTG
CACGTGATCG ACGAGATGTT CCCTCGGCTC GAGGTGGTGG GCCTGCGCGA AGGGCAGGAC
GATGCCGGCA AGAACTACCG GCAGACACGC GCGCTGCTGG AGCAGTACCC CGACATGGGC
GGCATCTACA ACATCGGCGG TGCGTCCGAC GGCGTGGCGC GCGCGCTGAA GGAGGCGGGG
CGCGAGCAGA AAGTGGTGTT CATCGGACAC GGGCTCACGC CCGACACGCG CACGCTGCTG
ATCGACGGCA GCATGGACGC GGTGATCACG CAGAGCCCGC ACACCACGCT GATGAGCTGC
GTGCGCATCT TTGCCAACCT GCGCGACGGG CGCGAGGCGC TCAGCGGCGT GGAAACCACC
CGCAGCCAGG TGATCTTCCG CGAGAACCTG CCCTAG
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| Protein sequence | MRDNPSPPAD ARRARVVDIA RAAQVSTATV DRVLNRRPGV RDATVQRVLK AAGELDYLPG
PELYAALTPP PLRLVFLLPA GTNRFIRMLG DMVGYSQEHW APFNVQCRTV FIESFNPHEL
ADALRKHGQR CDGIAMMALE HPAVREAVAA LAARGLPVVT LISDLSNSER AAFVGLDNRA
AGRTAGYLIG RFIGARAAKV ALIAGSLSYK AHEEREAGFL HVIDEMFPRL EVVGLREGQD
DAGKNYRQTR ALLEQYPDMG GIYNIGGASD GVARALKEAG REQKVVFIGH GLTPDTRTLL
IDGSMDAVIT QSPHTTLMSC VRIFANLRDG REALSGVETT RSQVIFRENL P
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