Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1948 |
Symbol | |
ID | 7971373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 2086928 |
End bp | 2087956 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644792547 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_002943861 |
Protein GI | 239814951 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.693179 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTCGC TCACTCGCCT GAACCGCCGC GGTGCCTTGC GCACGCTTTC CGCCCTCCCC GCCGCCGGCA TCGTGTCGGC CGTGCCGCGC ATCGCGCGCG CCGCGGAGTT CTCGTACAAG TACGGCAACA ACCTGCCGCT CAGCCATCCG CTGAACATCC GCGCGCAAGA GGCGGCCGAC CGCATCGCCA AGGAAAGCAA GGGCCGGGTC GAGATCAAGA TCTTTCCCAA CAACCAGCTC GGCGGCGACA CCGACATGCT GGCACAGGTG CGCTCGGGCG GCATCGAGTT CTTCACGCCC TCGGCGCTGG TGATTGCCAC GCTGGTGCCG GTGGCCGCCA TCAACGCGGT GGGCTTCGCG TTCAACGACT ACAGCCAGGT GTGGGGCGCC ATGGACGGCA AGCTCGGCGC GCATGTGCGC GGCGCCATTG CCAAGTCGCG CCTCTATGCT TTCGAGAAGA TGTGGGACAA CGGCTTTCGC CAGACCACCA GCAGCAAGGC GCCGGTCACC AGCGCCAAGG ACATGGACGG CCTGAAGATC CGCGTGCCCG TGAGCCCGCT GTCGATCTCG ATGTTCAAGG GCCTGGGCGC CGCGCCCGCG AGCCTGCAGT TCAGCGAGGT GTACTCGGCC CTGCAGACCA AGATCGTCGA TGCGCAGGAA AACCCGCTCC CCATCATCCA GGTGGCCAAG CTGTTCGAGG TGCAGAAGTT CTGCTCGCTC ACCAACCACA TCTGGGACGG CTACTGGTTC ATTGCCAACG GCCGCGCATG GGAGGCACTG CCCGACGACC TCAAGACCAT CGTGGCGCGC GCCATCAACG ACGCCGGCAT GCAGCAGCGC GAAGACATCA AGAAGCTCAA CGAGTCGGTG GTCGGCGACC TGCAGGCCAA GGGCCTCAGC ATCAACCGCC CGGTGGCCGA GAGCTTTCGC GCCAAGCTGC GCGAATCGGG CTTCTACGGC GAGTGGAAGG GCCGCTTCGG CCCCGAGGCG TGGGCGCTGC TCGAAGGCGC CGTCGGCAAG CTGGCCTGA
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Protein sequence | MTSLTRLNRR GALRTLSALP AAGIVSAVPR IARAAEFSYK YGNNLPLSHP LNIRAQEAAD RIAKESKGRV EIKIFPNNQL GGDTDMLAQV RSGGIEFFTP SALVIATLVP VAAINAVGFA FNDYSQVWGA MDGKLGAHVR GAIAKSRLYA FEKMWDNGFR QTTSSKAPVT SAKDMDGLKI RVPVSPLSIS MFKGLGAAPA SLQFSEVYSA LQTKIVDAQE NPLPIIQVAK LFEVQKFCSL TNHIWDGYWF IANGRAWEAL PDDLKTIVAR AINDAGMQQR EDIKKLNESV VGDLQAKGLS INRPVAESFR AKLRESGFYG EWKGRFGPEA WALLEGAVGK LA
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