| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1930 |
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| Symbol | |
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| ID | 7971109 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2064016 |
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| End bp | 2065335 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644792529 |
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| Product | polysaccharide biosynthesis protein |
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| Protein accession | YP_002943843 |
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| Protein GI | 239814933 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.336717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGTTCGG TAGGCGTGCT TATGGGCGGA ACGGTTTTTG CGCAAGCTAT CACCGTGCTA
GTTCTTCCGC TGCTTACACG CCTCTACCGC CCAGAAGATT TCAGCATCCT CGCTGTATAT
GCGGCGGTTC TAGCCATCAT TTCTGTCGTA GCTTGCTTGC GTTTGGAAAT TGCAATTCCG
TTGCCGGGGC TCGATGAAGA TGCTGCTAAT TTACTAGCAC TTGCGCTGCT CAGTTCTGCT
GGATCTGGGC TGGTCACCGC GATGGTGGTC ATGCTTTGGC CGGCCTGGAT AACGGAGTGC
CTAAAACAGC CCGATCTGCG TAGCCATTTG TGGTTGCTGC CGCTAGGGGT CTGGCTCACA
AGCTCGTATG CAGCCATCCA ATTTTGGGTC ACCCGAAAGA AAGGGTTTGC CATGCTGGCC
AAGACTCGCG TAACGCAATC AGCGCTCGGC ACGGGAACTC AGCTTGGCAT GGGCTGGTTG
GCGTTTGGCC CAATCGGCCT ATTGCTAGGA CAACTGCTAA ACAGCGGTGC CGGTGCTTTT
CGCCTTGGGT ACAAGGTATG GCAGGCTGAT AAGAATATTT TCTACACTAT TCATTGGGCG
GGAATGCGAA GGCTGCTCAA AGAATACGAA AAGTTTCCGC GTTACTCGGT TTGGGAAGCG
CTGGCAAACA ATGCCGGCAT CCAATTGCCT ATGCTAATCA TAGCAGCATT GGTTGTTGGT
CCGGAGGCTG GGTATTTGTT TCTGGCCACG CGCATTATGG CATCGCCCAT CAGTTTAATT
GGTGGAGCGG TGGCACAAGT CTATCTATCG CACGCCCCCG AAGCATACAA GGCCAAGGAC
TTGGGATCAT TCACCGTGAA AATACTCGGT GGATTGATGC GAACTGGGGT CGGCCCTCTG
TTGTTTATTG GAATTGTTGC GCCACTCGCA TTTCCTGTGA TTTTTGGTTC GAACTGGCAC
AGAGCGGGCG AGTTGGTTGC ATGGATGACT CCATGGTTCA TTATGCAATT ACTTTCCTCG
CCCGTCTCCA TGTCTCTTCA CGTGACGGGA AATCAAAGCG TCGCATTTCT TTTGCAGATG
TTTGGCTTCA TTCTGAGAGT CGCAGTAACG GGGTTGGCAG TTTGGTCCGG AAAATGGATA
TCTGAGGCAT ATGCCATCTC TGGATTTGTA TTCTATTTTG TCTACAACTA CGTGATCTTA
AAGACGGTCG GCAGTCAGAA GGCCGAGGTA ATTAGAACGC TTGGCTCGTC CCTTGTGCCA
GCCGGCCTTT GGGTAGGGGG TGGCCTGATT TCTTCTCTCT TATTATTGCT AGCTAAGTGA
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| Protein sequence | MRSVGVLMGG TVFAQAITVL VLPLLTRLYR PEDFSILAVY AAVLAIISVV ACLRLEIAIP
LPGLDEDAAN LLALALLSSA GSGLVTAMVV MLWPAWITEC LKQPDLRSHL WLLPLGVWLT
SSYAAIQFWV TRKKGFAMLA KTRVTQSALG TGTQLGMGWL AFGPIGLLLG QLLNSGAGAF
RLGYKVWQAD KNIFYTIHWA GMRRLLKEYE KFPRYSVWEA LANNAGIQLP MLIIAALVVG
PEAGYLFLAT RIMASPISLI GGAVAQVYLS HAPEAYKAKD LGSFTVKILG GLMRTGVGPL
LFIGIVAPLA FPVIFGSNWH RAGELVAWMT PWFIMQLLSS PVSMSLHVTG NQSVAFLLQM
FGFILRVAVT GLAVWSGKWI SEAYAISGFV FYFVYNYVIL KTVGSQKAEV IRTLGSSLVP
AGLWVGGGLI SSLLLLLAK
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