| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1926 |
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| Symbol | |
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| ID | 7971105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 2060002 |
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| End bp | 2061297 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644792525 |
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| Product | nucleotide sugar dehydrogenase |
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| Protein accession | YP_002943839 |
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| Protein GI | 239814929 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0677] UDP-N-acetyl-D-mannosaminuronate dehydrogenase |
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| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.544899 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTCAA ACAACTCCAA AATTGCGGTG ATCGGCCTCG GCTATGTCGG TCTGCCGCTT
GCCGTTGAAT TCGGCAAGAA GCGCGATGTC GTTGGGTTCG ACATCAACCC CAAGCGCATT
GCCGAACTGA GGGTAGGGCG CGACCACACG CTTGAAACCA CGCCAGAAGA GCTGAAGGCA
GCAAGTCGCC TGGCGTTCTC GTCGGATTTG GCCGACTTGC GCGATTGCGA GATTTTCATC
GTCACGGTGC CCACCCCCAT CGACAACGCC AATCGCCCAG ACCTCACGCC ATTGATCAAG
GCCAGCGAGA CGGTCGGCAA AGTCATGCCG GCCGGCGCAA TCGTCATCTA TGAATCCACT
GTGTACCCGG GCGCGACCGA AGAGGTGTGC GTGCCCGTGC TGGAGAAGCA CAGCGGCCAG
AAATTCAATG TCGACTTTTT CTGCGGCTAC AGCCCTGAGC GGATCAATCC CGGCGACAAG
GTCAATACGC TGACCAAGAT CAAGAAGATC ACCAGCGGCT CCACTCCCAA GGTGGCGCAG
ATCGTCGACC GGCTTTACGC CGAGATCATC ACCGCCGGTA CCTACCGGGC TTCGAGCATC
AAGGTGGCAG AGGCCGCCAA GGTTATCGAG AACACGCAGC GCGACTTGAA CATTGCGCTT
GTGAATGAGC TTTCCGTCAT CTTCGACAGA CTGGGCATCG ATACGCTCGA TGTGCTGGAG
GCCGCGGGCA GCAAATGGAA TTTCCTGCCT TTCCGGCCCG GTTTGGTTGG AGGGCACTGC
ATTGGTGTCG ACCCTTACTA CCTCACGCAC AAGGCCGAGG AAGTCGGCTA CCACCCCCAA
GTAATTCTTG CGGGCCGGCG CATCAACGAC AACATGGCCC GCTACGTGGC GCGCAACACC
ATCAAGCACA TGTTGCGCAA CGGCATGGAT GTGCCGCGCT GCCGTGTTGG CGTGCTCGGC
ATTACCTTCA AGGAAAACTG CCCGGACATT CGCAACAGCA AGATCGTGGA CATGGTGCGC
GAGTTCGAAA CCTGGGGTGT CCAGGTCGTG GTGGCTGACC CGTGGGCCGA TTCGGCAGAG
GTCGCACACG AATATGGCCT GCAACTGGGC GCCGTGGACT CCGAACATCT GGTGGACGCA
CTTGTGGTGG CGGTTGGCCA CAACGAATAC AGACAAACCA ACCCTGCCGC GCTGCGCGCC
ATGTGCCGCG GCACGAAGCC CGTGCTGGCC GACGTCAAGA GCCTTTTCGA CCGGCACCAC
GCCGCCGAAG CAGGTTTTAC CGTTTTCCGC CTTTGA
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| Protein sequence | MNSNNSKIAV IGLGYVGLPL AVEFGKKRDV VGFDINPKRI AELRVGRDHT LETTPEELKA
ASRLAFSSDL ADLRDCEIFI VTVPTPIDNA NRPDLTPLIK ASETVGKVMP AGAIVIYEST
VYPGATEEVC VPVLEKHSGQ KFNVDFFCGY SPERINPGDK VNTLTKIKKI TSGSTPKVAQ
IVDRLYAEII TAGTYRASSI KVAEAAKVIE NTQRDLNIAL VNELSVIFDR LGIDTLDVLE
AAGSKWNFLP FRPGLVGGHC IGVDPYYLTH KAEEVGYHPQ VILAGRRIND NMARYVARNT
IKHMLRNGMD VPRCRVGVLG ITFKENCPDI RNSKIVDMVR EFETWGVQVV VADPWADSAE
VAHEYGLQLG AVDSEHLVDA LVVAVGHNEY RQTNPAALRA MCRGTKPVLA DVKSLFDRHH
AAEAGFTVFR L
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