Gene Vapar_1885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1885 
Symbol 
ID7971064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2018010 
End bp2018648 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content69% 
IMG OID644792487 
Productcysteine dioxygenase type I 
Protein accessionYP_002943801 
Protein GI239814891 
COG category[R] General function prediction only 
COG ID[COG5553] Predicted metal-dependent enzyme of the double-stranded beta helix superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACCA CCCACAGCCT CTCCGGCACT GCATTGGCCG CCCGGCGCCG CGTCGCCGTC 
GACCAGGCGC TGACCGATAT CCGCGGCATC GCGAGCACGC AGCCCTTCGA CCGCACCGTT 
CTTGCGCGCA TCACGGCGCG CCTCGAAAAG CTCGCGCAGC AGACCGAGCT TTTCACCCGC 
ACCGACTTTC CGCCGCCGGC CGCCACGGAA GGCGTGGGCG CCTCCACGCG CTACCGCCTG 
AACCCCGAGG ACGGCGACGA CGACCTGGCG CTCTACCTGA ACTCCATCAA CCCCGGCAAG 
ACCTCGATTC CGCACAACCA CACGACCTGG GCCGCCATCG TGGCGGTCGA GGGACAGGAG 
GAGAACCGCA TCTACCGCCG CACCGACGAT GGCCGCGACC CGGCCGTGGC CCGGCTGGAG 
CTCGAGCGCG AAGTGACGGT GCAGCCCGGC ACGCCGATCG CCTTCCTGCC CGACGACCTG 
CACAGCATCC ACGTGATCGG CGACGAGCCC ACGCTGCACT TCCACCTGTA TGGCCGGCCG 
CTCGAAACGC TCTCGCAGCG CATCGGCGTG AACCTGGAGA CTGGCGCGGT CGTCAACTAC 
AACGCCACGC AGCTCAAGCC GAGCAAGGCG GTGGCATGA
 
Protein sequence
MTTTHSLSGT ALAARRRVAV DQALTDIRGI ASTQPFDRTV LARITARLEK LAQQTELFTR 
TDFPPPAATE GVGASTRYRL NPEDGDDDLA LYLNSINPGK TSIPHNHTTW AAIVAVEGQE 
ENRIYRRTDD GRDPAVARLE LEREVTVQPG TPIAFLPDDL HSIHVIGDEP TLHFHLYGRP 
LETLSQRIGV NLETGAVVNY NATQLKPSKA VA