| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1884 |
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| Symbol | |
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| ID | 7971063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 2016808 |
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| End bp | 2018013 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792486 |
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| Product | cystathionine beta-lyase |
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| Protein accession | YP_002943800 |
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| Protein GI | 239814890 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01324] cystathionine beta-lyase, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCGG CATTTCCAGG AAAACGCCTG CATTCCGCCA CCCGGCTGCT GCATGCGGGC
GCACCCGCGC TGCGCGGCGG CGCGGGGCCG GTGAACGTGC CCGTGGTGCG AACCAGCACC
GTGCGCTTCG AGAACACGGC CGCCCAGGCC GACCATCACC TCCGCCGCAC GGCGGGCGAA
CGCGTGGCCT CCTACGGCCG CCACGGCCTG GACACCCACC GCGCGCTCGA AGACGCGGTG
GTCGGCCTCG AGGGCGGGCA CCGCGCCTTC CTCACGCCCT CGGGGCTGTC GGCGATCACG
CTGGTGCTGC TCGCACTGCT TTCGCCCGGC GACCACGCGC TGGTGGCCGA CGGCGTGTAT
GCACCGCTGC GCCGGGTCGA CAGCACGCTG CTGCAGCGCC TGGGCATCAC GGTCGAGTAT
TTCTCGCCCA CGCACGACGA CCTCGCCAGC CGGCTGCGGC CGAACACGCG CCTGCTGTAC
CTCGAGTCGC CGAGCTCGCT GCTCTACGAG GTGCTGGACC TGCCCGCGCT GAGCGCCGTC
GCGCGCGACC GCGGCGTGAC CGTGGCCACC GACAACACCT GGAGCGGCGG CTGGTTCCAT
CAGCCGCTGG CGCTGGGCGC CAACATCTCG ATCCAGGCGG CCACCAAGTA CATCTCGGGC
CATTCCGACC TGATGCAGGG CATCGTGGTG GTCGACAGTC CGGCGCTGGC CGCCAAACTC
TCGACCGCCT ACGAGGCGCT CGGCCTCACC ATCGGCGCCG ACGATGCCTA CCTCGCCCTG
CGCGGCCTGC GCACGCTGCC GGTTCGGCTG GCACAGCACC AGCGCAATGC CACCGCCGTG
GCCGAGTTCC TGCAGCAGCA GCCGCAGGTG TCGCGCGTCT TCTACCCGGC GCTGCCCACC
GACCCCGGCC ATGCACTGTG GAAGCGCGAT TTCAGCGGTG CGAGCGGCCT GGTCTCCTTC
GAATTCCGCC ATGCCACGAC GGCGGCGGCC AACGCCTTCG TCGATGCGCT TGCGCTCTTC
GGCATCGGTG CCTCGTGGGG CGGCTACGAA AGCCTGGCGC TGGCCGCCCA GCCCGAAAGG
CTGCGCGAAC ACCGGCAGTG GACTGGCGAT GCGCCCGTGG TGCGGCTGCA CATCGGGCTC
GAAGAGCCGC AAGACCTGAT CGCCGACCTG GCACAAGCCT TCGCTGACGC TGCGCCGGCA
CTCTGA
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| Protein sequence | MTAAFPGKRL HSATRLLHAG APALRGGAGP VNVPVVRTST VRFENTAAQA DHHLRRTAGE
RVASYGRHGL DTHRALEDAV VGLEGGHRAF LTPSGLSAIT LVLLALLSPG DHALVADGVY
APLRRVDSTL LQRLGITVEY FSPTHDDLAS RLRPNTRLLY LESPSSLLYE VLDLPALSAV
ARDRGVTVAT DNTWSGGWFH QPLALGANIS IQAATKYISG HSDLMQGIVV VDSPALAAKL
STAYEALGLT IGADDAYLAL RGLRTLPVRL AQHQRNATAV AEFLQQQPQV SRVFYPALPT
DPGHALWKRD FSGASGLVSF EFRHATTAAA NAFVDALALF GIGASWGGYE SLALAAQPER
LREHRQWTGD APVVRLHIGL EEPQDLIADL AQAFADAAPA L
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