| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1858 |
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| Symbol | |
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| ID | 7970875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1989392 |
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| End bp | 1990555 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792459 |
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| Product | oxidoreductase domain protein |
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| Protein accession | YP_002943774 |
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| Protein GI | 239814864 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.637102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCACCC AACGACTCGG AATCATCATG CACGGCGTCA CCGGCCGCAT GGGCATGAAC
CAGCATTTGA TCCGCTCCAT CTGCGCGATC CGCGCCCAAG GCGGCGTCAC GCTGTCGAAC
GGCGACAAGG TGATGCCCGA CCCGATCCTC ATCGGCCGCA ACGCCGAGAA GATGGAAGCG
CTCGCCAAGG CCCACAACAT CGCGCGCTGG GGCACCGACC TGGACGCGGC GCTCGCCAAC
AACGACGACA CGATCTTCTT CGACGCCGGC ACCACGCAGA TGCGCCCGAC GCTGCTGGCC
AAGGCGATCC GCGCCGGCAA GCATGTGTAC TGCGAAAAGC CCATCGCCAC CAATCTCAAT
GAGGCCGTCG AGATCGCGCG CCTGGCCGAA GGCTCGGGCC TGAAGCACGG CGCGGTGCAG
GACAAGCTGT TCCTCCCGGG CCTGCGCAAG CTCGACATGC TGCGCCGCGC GGGCTTCTTC
GGCCGCATGC TCAGCGTGCG CCTGGAGTTC GGCTACTGGG TGTTCGAGGG CGACCTGCAG
CCGATCCAGC GTCCGAGCTG GAACTACCGC AAGGAAGACG GCGGCGGCAT GATCCTGGAC
ATGATGTGCC ACTGGCGCTA CGTGCTGGAC AACCTGTTCG GCGAAGTGAA GTCTGTGTCG
TGCATCGGCG CCACGCACAT CCCCAGGCGC TGGGACGAAG CCGGCAAGCC GTATGAAGCC
ACCGCCGACG ACGCGGCCTA CGCCACCTGC GAGCTCACGG GCCACAACGG CGAGCCGGTG
ATCGCGCAGA TCAACATGAG CTGGGCCACG CGCGTGCGCC GCGACGACCT CGTGACCTTC
CACGTCGACG GCACCGACGG TTCGGCCGTG GCGGGCCTGT CGAGTTGCCG CGCCCAGTCG
CGCGTGGCCA CGCCGCGGCC GGTGTGGAAC CCGGACGAGA AGCAGATGAT GAATTTCTTC
GACCAGTGGC AGGAGATTCC GGATTCGCAG GTCTACGACA ACGGCTTCAA GATCCAGTGG
GAGCACTTCA TCCGCCACGT GGTGGAGAAC GAGCCCTACA AGTGGACCTT GCCCGAAGGC
GCCAAGGGCG TGCAATTGGT CGAGGCTGCG CTCGAATCGT GGAAGGACCG CCGCTGGGTC
GACGTGCCTG CGCTGAAGGT CTGA
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| Protein sequence | MATQRLGIIM HGVTGRMGMN QHLIRSICAI RAQGGVTLSN GDKVMPDPIL IGRNAEKMEA
LAKAHNIARW GTDLDAALAN NDDTIFFDAG TTQMRPTLLA KAIRAGKHVY CEKPIATNLN
EAVEIARLAE GSGLKHGAVQ DKLFLPGLRK LDMLRRAGFF GRMLSVRLEF GYWVFEGDLQ
PIQRPSWNYR KEDGGGMILD MMCHWRYVLD NLFGEVKSVS CIGATHIPRR WDEAGKPYEA
TADDAAYATC ELTGHNGEPV IAQINMSWAT RVRRDDLVTF HVDGTDGSAV AGLSSCRAQS
RVATPRPVWN PDEKQMMNFF DQWQEIPDSQ VYDNGFKIQW EHFIRHVVEN EPYKWTLPEG
AKGVQLVEAA LESWKDRRWV DVPALKV
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