| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1823 |
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| Symbol | |
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| ID | 7970840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1956822 |
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| End bp | 1957535 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792424 |
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| Product | Helix-turn-helix type 11 domain protein |
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| Protein accession | YP_002943739 |
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| Protein GI | 239814829 |
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| COG category | [K] Transcription |
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| COG ID | [COG2378] Predicted transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.406304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGCGTG CCGACCGCCT GTTCCAGCTC GTGCAGATCA TCCGCGGGCG CCGGCTCACC
ACGGCGGCCT TCCTGGCGCA GCGCCTGGAG GTCTCGGAGC GGACGGTCTA CCGCGACGTG
GCCGACCTGC AGCACCAGGG CGTCCCCATC GAAGGCGAGG CCGGCGTGGG CTACCGGCTG
GGTGCGGGCT TCGAGCTGCC GCCGCTGATG TTCACGCAGG ACGAGGCTTC GGCGCTCGTG
GCCGCGGCAC GCCTGGCACA GAGCTGGGTC GATCCGGCGC TCGCGCGCGA CATCGAGACC
GGGCTCGGCA AGATCCTCTC GGTGCTGCCG CCGGCGGCGC GCGTCTCGGC CGAGGCGCTG
GCGCTCTACG CGCCCGCACT GGGCCTGGGC GACGCCCTGC GCACGCGGCT GCAGACCCTG
CGCGAAGCCG TGCAGGCGCG CCAGAAACTG CGCCTTCACT ATCGCGACGT GTCGGGCGAT
GCGAGCGAAC GCACCGTGCG TCCGCTCGGC TGCTTCTACT GGGGCAAGGT CTGGACGCTT
TCGACCTGGT GCGAGCTGCG CAACGACTTC CGCGGCTTTC GCATCGACCG CATGGACGCG
GTCGACGTGC TGCCCGAACG CTTTCGCGAC GAAGCAGGCA AGACGCTGGC CGACATGCTG
CGCCAGGTGA AGGCGCGGGC GGCCGAAGCG AAGCTGCCGC AGCAGCAGAA ATGA
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| Protein sequence | MRRADRLFQL VQIIRGRRLT TAAFLAQRLE VSERTVYRDV ADLQHQGVPI EGEAGVGYRL
GAGFELPPLM FTQDEASALV AAARLAQSWV DPALARDIET GLGKILSVLP PAARVSAEAL
ALYAPALGLG DALRTRLQTL REAVQARQKL RLHYRDVSGD ASERTVRPLG CFYWGKVWTL
STWCELRNDF RGFRIDRMDA VDVLPERFRD EAGKTLADML RQVKARAAEA KLPQQQK
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