| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1808 |
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| Symbol | |
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| ID | 7970825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1942712 |
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| End bp | 1944931 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644792409 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002943724 |
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| Protein GI | 239814814 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.433802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCCTT TCGGCGCATT GATGCTGGCC GCCTCTGTCA GCAGTTGGGC GCAGACGCCT
GAAGCCCCGG TGCAGGGCGG CACGCTTGGA ACCGTGACGG TGACCGAGCA GGCCGAGGTC
CAGGGCAAGG ACCAGGTCCA GACCAGGAAA ACCAACATCG GCAAGGGAAC GCAGGACATC
CGCGACATTC CGCAATCGAT CAACGTCATC ACCGAAAAGC TGATCGACGA CGTCAAGCTC
GACACGCTGA AGGACGCCTT GCACTATTCG GCGGGCATCA CCTTTGCCGC GACCGAGAAC
GGCACCGACC AGGACATCCG GCTGCGCGGC TTCCCGATCG CCAGCACCGG CGACCTGATG
ATCGACGGCA TGCGCGACCC CTCGCAGTAC GACCGCGACA CCTTCAACCT CGACCGCGTC
GAAGTGATGC GCGGCTCGGC CTCCATGCTC TTCGGCCGCG GCTCCACGGG CGGCGTCGTG
AACCAGGTGA GCAAGAGGCC GCTGCTGGCC GACCAGACCG ACGTCGTGGG TACGCTGGGC
AGTGGCGGCT ACTTTCGCAC CACCGCCGAT TTCAACGTGC GCACCGGCGA GACCTCGGCA
CTGCGCATCA ACGCGATGTA CAACAAGGCC GACAACGGCG GCGCGAAGAT CGACAAGTAC
GGCATCGCAC CCTCGTACAG CTGGGGCCTG GGGACCGCGG ACGAATTCAC CGTGGGCCTG
TTCCACCTGA AGAACAACAA CGTGCCGATG TCGGCCGTGC GCTACGTCAA CGGCAGCCTG
GCGCCGGTCA AGCCCGGCAA CTTCTACGGC ACCTCGGCGG ACTTCGTCGA CGGCGAGGCG
AACTACGTGC ACGGCGCATG GAAGCACAGG TTCGCCAACG GCGGCGAACT GCGCACCCAG
TTGCGCAGCG GCGTGTTCGA GCGGGCGCAA TGGAGCACGG CGGTGGGCGC CTGCGGCGCG
CTTCCCACGG CGGCTGGAAC CTGCCCGGCC GGCACCCGGG CGGTCACGGC GCTCGATCCG
TCGACCTTCC TCACGCGCAG CAGCCTCACG CCGCGCAAGG ACCGCTACAA GGGCACCTAC
GCGCAGAGCG ACTACAGCCT GGCCTTCGAT GCGCTCGGCG TGAAGCATGA GCTGCTGGCC
GGCATCGATG CCTCGAAGGA GGAGGCCGTT CGCTTCCAGA ACAACGGCAG CACGCTCGGC
ATCCGTCCGC CCACGCGCGT CGGTACGCCC GACGACGGAG CTGGCCTGGT CGGCACTGGC
CTGTCGCCGC AATGGCGCAA TTCGAGCAAC TACGACGCGA AGGCCTACGG CCTCTACGTG
CAGGACCTGG TCCAGGTCGC GCCGCACTGG AAGGTGCTCG GCGGCATTCG CTACGACAGC
TTCAAGGGTG ACTTCGAGCA GCTGAACTAC CGCACTGGCG CAGTGAGCAG CACGCCGCTG
AGCGTCACCA GCACGCATTT GTCGAACTCG CCGTGGAGCT ACCGCGGCGG CGTGATGTAC
CAGCCCTCCG ATTCCCAGTC GTACTACGTG TCGTACGGCA CCTCGTTCAA CACCTCGGCC
GACACCTACC AGTACGTCAC GCCGCAGAAC GCCAACACGC CGCCCGAGAA GAGCCGCAAC
CTCGAAGTGG GTGCCAAGCT CGACTGGCTG GACGGCGCGC TCTCCACGCG CGGCGCGATT
TTCCGCACCG AGAAGTACAA CGAGCGCACC ACCGATGCCG ACTTTGCCGG CTCGGCCTAC
ACGCTCTCGG GCAAGCGGCA TACCGCAGGC GTCGAGCTCG ACGTGGTCGG CCGCCTGGGC
CGGCAGTGGG AGGTCTACGC TTCGTACACC TGGATGCCGG TCGCCAAGAT CGACCAGGCC
GGCAGCGCGG CTGCGGCGCA GGCCTCGGTC GGCCAGCGCG TGGGTCTCAC GCCCAAGCAG
TCGGGTGCGG TCTGGGTCAG CTACCAGGCA ACGCCGAAGC TGCGCGTCGC ACTGGGCGCG
CATGGCGCGA CCGAGAACCG GCCGCTGACG GGCACCACCG GCGCCGCGTC GGCGACCGCC
CGCGTGCCGG GCTATGTCGT GGCCGATGCA ATGCTCGAAT ACAAGTTCAC GCCGGACGTG
TACGCGCAGA TCAACATCAA CAACCTCAGC AACAAGGCCT ACGGCGATCA GCTGTATCCG
GGCTTTGCCA TCCTGGGCGC CAAGCGCCAG GTGCTCGGCA CGGTCGGCGT GCGCTTCTGA
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| Protein sequence | MLPFGALMLA ASVSSWAQTP EAPVQGGTLG TVTVTEQAEV QGKDQVQTRK TNIGKGTQDI
RDIPQSINVI TEKLIDDVKL DTLKDALHYS AGITFAATEN GTDQDIRLRG FPIASTGDLM
IDGMRDPSQY DRDTFNLDRV EVMRGSASML FGRGSTGGVV NQVSKRPLLA DQTDVVGTLG
SGGYFRTTAD FNVRTGETSA LRINAMYNKA DNGGAKIDKY GIAPSYSWGL GTADEFTVGL
FHLKNNNVPM SAVRYVNGSL APVKPGNFYG TSADFVDGEA NYVHGAWKHR FANGGELRTQ
LRSGVFERAQ WSTAVGACGA LPTAAGTCPA GTRAVTALDP STFLTRSSLT PRKDRYKGTY
AQSDYSLAFD ALGVKHELLA GIDASKEEAV RFQNNGSTLG IRPPTRVGTP DDGAGLVGTG
LSPQWRNSSN YDAKAYGLYV QDLVQVAPHW KVLGGIRYDS FKGDFEQLNY RTGAVSSTPL
SVTSTHLSNS PWSYRGGVMY QPSDSQSYYV SYGTSFNTSA DTYQYVTPQN ANTPPEKSRN
LEVGAKLDWL DGALSTRGAI FRTEKYNERT TDADFAGSAY TLSGKRHTAG VELDVVGRLG
RQWEVYASYT WMPVAKIDQA GSAAAAQASV GQRVGLTPKQ SGAVWVSYQA TPKLRVALGA
HGATENRPLT GTTGAASATA RVPGYVVADA MLEYKFTPDV YAQININNLS NKAYGDQLYP
GFAILGAKRQ VLGTVGVRF
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