| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1786 |
|---|
| Symbol | |
|---|
| ID | 7974528 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1923527 |
|---|
| End bp | 1924474 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644792385 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002943702 |
|---|
| Protein GI | 239814792 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCG GCGATCTCGA GCTGGTGCTG GCGATCCGCG ACCAGGGAAG CCTGGCGGGC
GCCTCCGCCA CGCTGGACGT GGTGCCCTCG GTCGTGACCA AGCGGCTCGG TGCGCTCGAG
GCGCGGCTGG GCCAGCGGCT GTTCGAGCGC ACCACGCGCC GCCTCAGCGT GACGGCCGAG
GGCGAAGCGG TCTGCCTGCA CGCGAGGGCG TTGCTCGAAG GCTTTGCCGC GCTCGAAAGC
GAACTTGGCG AGCGGCAGAA CGAGCTGGTG GGCACCATCC GGCTGGCTGC GACCTTCGGC
TTCGGCCGTC GCTGGCTCGG CCCTGCCCTG GCCAGCTTCC AGGCGCGCCA TCCCGGGCTG
CAGATCGAGT TGCTGTTGAC CGAGCGGCTG CCCGACCTCG GCGCCGAAGG CTATGACGGC
GCGCTCTGGC TCTGGGCCGT GCAGCAGCGC CGCGCGGCCG ACTGGGTCAC GCGCCGCATT
GCGCGCAACC AGCGCGTGCT GGCCGCCTCT CCTTCATATA TGGAGCGGCG CGGCCTGCCG
GCCAACGTCG ATGCGCTGGC GGCCCACGAC TGCCTGGTCG CGCGCGAGAA CGGAGAGGTC
AACCAGCACC AGTTCGCGCT GTGGACCCTG CGCCATGCGC GCGACGGCAG CACGGCGCGC
GTGCGAGTCC AGGGTCCGCT CACGAGCAAT TCGGGCGAGA TGGTGCGCGA CTGGTGCCTG
GCCGGCCACG GCATCATGCT GCGCAGCCTG TGGGACATCG CACCGCAACT GGCTTCCGGT
GAACTGGTGC GGGTGCTGCC CCACTACGCC ATGCCCGATG CCGACATCCA CTGGATCGCG
CCCTGGCGCC CCAAGACGCC GCGCCGCGTG CGGCTGCTGC TCGACCACCT GGCCGAACAG
TTCCGCGGCG AGCCCTGGAA ACCCGGCAAG GCCGGTTCGC CGCGCTGA
|
|---|
| Protein sequence | MDRGDLELVL AIRDQGSLAG ASATLDVVPS VVTKRLGALE ARLGQRLFER TTRRLSVTAE
GEAVCLHARA LLEGFAALES ELGERQNELV GTIRLAATFG FGRRWLGPAL ASFQARHPGL
QIELLLTERL PDLGAEGYDG ALWLWAVQQR RAADWVTRRI ARNQRVLAAS PSYMERRGLP
ANVDALAAHD CLVARENGEV NQHQFALWTL RHARDGSTAR VRVQGPLTSN SGEMVRDWCL
AGHGIMLRSL WDIAPQLASG ELVRVLPHYA MPDADIHWIA PWRPKTPRRV RLLLDHLAEQ
FRGEPWKPGK AGSPR
|
|---|
| |