| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1757 |
|---|
| Symbol | |
|---|
| ID | 7974499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1891794 |
|---|
| End bp | 1892999 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644792356 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_002943673 |
|---|
| Protein GI | 239814763 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGG CCACCGAAGA AAAACGCCTG CCGCTCACGG GCATTCGCGT GGTCGAGTTC
ACGCACATGG TCATGGGCCC GACCTGCGGC ATGGTGCTGG CCGACCTCGG CGCCGAGGTC
ATCAAGGTCG AGCCGATCGA CGGCGACCGC ACGCGGCACC TGCTGGGCGC GGGCGCCGGT
TTCTTTCCGA TGTTCAACCG CAACAAGAAG AGCATCGCGC TCGACCTGCG CCACCCGCAG
GGGCTGGAAG CGGCGCTGCG CCTGTGCGCC ACCGCCGACG TGGTGGCGCA GAACTTCAGG
CCCGGCACCA TGGACAAGTA CGGCCTGGGC CATGCCGCGC TCGGCAAGCT CAACCCACGC
CTGGTGTACG TCAACCACAC GGGCTTCCTG CCCGGCCCCT ACGAGCACCG CACGGCCCTC
GACGAAGTGG TGCAGATGAT GGGCGGCCTG GCCTACATGA CGGGCCGCCC CGGCGACCCG
CTGCGCGCGG GCAGCAGCGT GAACGACATC ATGGGCGGCA TGTTCGGCGC GATCGGCGCC
ATGGCGGCGC TGATGCAGCG CGCGCAGACC GGCAAGGGCC AGGAGGTGCA GTCGGCGCTG
TTCGAGAACA ACGTGTTCCT GGTCGGCCAG CACATGCTGC AGTACGCGAT CACCGGCCAG
GCCGCCGCGC CGATGCCCCA GCGCATCTCG GCCTGGGGGC TGTACGACGT GTTCACCGTG
AAGGACGGCG AGCAGATCTT CCTGGCCGCG GTGAGCGACG CGCAATGGAC CGTGTTCTGC
GACGCGCTGG GCTTCGACGA CCTGAAGGCC GACCCGGCGC TGCGCACCAA CAACGACAGG
GTCCGCCTGC GTCCCACCTT GCTCGCGGAC CTGCGCCAGC GCCTGGCCGA CCGCCCGGCC
GCCGAACTGT CGGCCATCTT CGAGGCGCGC GGCCTGCCGT TCGCGCCCAT CGTGCGGCCC
GAGGACCTCT ACGAGGATCC GCACCTGAAG GCGACCGGCG GCCTCGCCGA CATCCGCCTG
CCCGACGGCG AGCGCGCCGG CCAGACCGCG CAGACCACGC TGTTCCCGAT CACGCTCGGC
GGCGAGCGCC TGGGCGTGCG CCTGGACCCG CCGACGCTCG GCGAGCACAC GCGCGAGCTG
CTCGCCGAGC TCGGCTACGG CGATGCGCAG GTGGTCGCGA TGCAGGCCGA ATCGGCCGTC
GCCTGA
|
|---|
| Protein sequence | MNAATEEKRL PLTGIRVVEF THMVMGPTCG MVLADLGAEV IKVEPIDGDR TRHLLGAGAG
FFPMFNRNKK SIALDLRHPQ GLEAALRLCA TADVVAQNFR PGTMDKYGLG HAALGKLNPR
LVYVNHTGFL PGPYEHRTAL DEVVQMMGGL AYMTGRPGDP LRAGSSVNDI MGGMFGAIGA
MAALMQRAQT GKGQEVQSAL FENNVFLVGQ HMLQYAITGQ AAAPMPQRIS AWGLYDVFTV
KDGEQIFLAA VSDAQWTVFC DALGFDDLKA DPALRTNNDR VRLRPTLLAD LRQRLADRPA
AELSAIFEAR GLPFAPIVRP EDLYEDPHLK ATGGLADIRL PDGERAGQTA QTTLFPITLG
GERLGVRLDP PTLGEHTREL LAELGYGDAQ VVAMQAESAV A
|
|---|
| |