| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1749 |
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| Symbol | |
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| ID | 7974491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1883893 |
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| End bp | 1884879 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792348 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_002943665 |
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| Protein GI | 239814755 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.205001 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAGC CTTCAACGTA CCAATCGGCC CTGCTGCGCA AGGCGCGCTG GCGCCCGCTC
GAATTCGTGG CCTGGGCCGT GGCCTTTGCG CTGCCGTTCC TCATGCCCTC GCATTCGCTG
CTGGTCAACG AGATCGCCAT CGTCGCGCTG TTCGCGATGT CGCTCGACCT GATCCTCGGC
TACACCGGCA TCGTGTCACT CGGGCATGCC GCCTTCTTCG GCTTTGGCGC CTACGCCGCG
GCGCTGTTCG CCAAGCTCGT GATGCCCGAC CCGACCGTGG GGCTGGTGGT GGCCGCCGTG
CTCTCGGCCA TGCTCGGCCT GATCGCCAGC GTCACGATCC TGCGCGGCAG CGACCTCACG
CGGCTGATGG TGACGCTGGG CACTGCGCTG CTCCTGCTCG AACTCGCCAA CAAGCTCGAC
TGGCTCACGG GCGGTGCCGA CGGCCTGCAG GGCGTGGTGA TGGGGCCGGT GCTCGGCCTG
TTCGCGTTCG ACCTCTACGG CCGCACGGCG GCCTGGTATT CGCTGACGGT GATGCTGCTG
CTGTTCCTCG CGATGCGCCG CATCGTGCAT TCGCCCTTCG GCGCCACGCT GAAGGCCATC
CGCGACAACC GGCTGCGCGC CATGGCCATC GGCATTCCGG TGGTGTCGCG GGTCGTCGTC
ATCTACACCG TGGCCGCCGG CATTGCCGGT GCCGCGGGCG CGCTGCTCGC GCAGACCACG
GGCTTTGCCT CGCTCGACGT GCTGGCCTTC GACCGCTCGG CCGACGTGCT GCTGATGCTG
GTGATCGGCG GCGTGGGCTG GCTCTATGGC GGCGTGGCGG GCGCCATCGT CTTCAAGCTG
CTGCAGAACT GGCTCTCGGC CGTGACGCCG CAGTACTGGA TGTTCTGGAT CGGCCTCTTG
CTGGTGCTGC TGGTGCTCGT GGGGCGCGAC CGCGTGCTCA AGCCGTGGAC CTGGCTGGGC
AAGAGGAAGA AGGGAGGCGC GGCATGA
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| Protein sequence | MNEPSTYQSA LLRKARWRPL EFVAWAVAFA LPFLMPSHSL LVNEIAIVAL FAMSLDLILG
YTGIVSLGHA AFFGFGAYAA ALFAKLVMPD PTVGLVVAAV LSAMLGLIAS VTILRGSDLT
RLMVTLGTAL LLLELANKLD WLTGGADGLQ GVVMGPVLGL FAFDLYGRTA AWYSLTVMLL
LFLAMRRIVH SPFGATLKAI RDNRLRAMAI GIPVVSRVVV IYTVAAGIAG AAGALLAQTT
GFASLDVLAF DRSADVLLML VIGGVGWLYG GVAGAIVFKL LQNWLSAVTP QYWMFWIGLL
LVLLVLVGRD RVLKPWTWLG KRKKGGAA
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