Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1739 |
Symbol | |
ID | 7974481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1872322 |
End bp | 1873455 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644792338 |
Product | ABC-2 type transporter |
Protein accession | YP_002943655 |
Protein GI | 239814745 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGGCT TCGGCACCCG GCTCGTCTCG CTCACGCGCA AGGAATTTCG CCAGCTGCTG CGCGACCGCA GCAACCTGGC CATCGGCATC CTGCTGCCCA TGGTGCTGAT CCTGATCTTC GGCTATGGCA TGTCGCTCGA CGTGAAGAAC GCGCCGGTGG CCGTGGTGCT CGAAGATTCC TCGCCGATGG CGCACGAGGC CATTGCCGGC CTGCAGCTCT CGCCCACCAT CGCACCCGTG CTGCTGGGCT CGATGCGCGA CGCCGAGGCC CTGATGCGCG AGCGCAAGGT CGACGGCATC GTGCGCGTGC CCGCCGACTT CTCGCGCGCG CTGGCCGCGG GCGATGCGCG CGTGCAGCTC ATCGTGCATG GCGCCGACGC GGGGCGCGCC ACCATCATCC AGGCCTATGT GAGCAGCGCG CTGGCGCAAG CGGCCCTGCG CCAGGCCGAC CGCGGCGGCG CGGCCGGTGC GGCCGCGCCT TCGGCGGGCC GCGTGACGGT GGAGCAGCGC ATGTGGTTCA ACGCCGCGAA CACCAGCACC TGGTACCTGG TGCCCGGGCT CATCGTGCTC ATCATGACGC TGATCGGCGC CTTTCTCACC GCGCTGGTGA TGGCCCGCGA ATGGGAGCGC GGCACGCTCG AGGCGCTGTT CGTCACGCCG GTGCGGCCGG TGGAAATCCT GCTGGCCAAG ATCATTCCGT ATTTCGCGGT CGGCATGCTG GGCCTGGCGC TGTGCCTCCT GGCCGCGCGC TTCCTGTTCG CGGTGCCGAT GGTCGGCTCG CTGTTCGCGG TGGTGCTCAG CTCGATGCTC TACCTGATCG TGGCGGTGAG CCTGGGGCTG GTGATCTCGT CGGTCACGCG CAACCAGTTT CTCGCGAGCC AGGTGGCGCT GATCGCCACC TTCATGCCTT CGATGATGCT GTCGGGCTTC CTGTTCGACC TGCGCAACGT GCCCACCGCC GTGCGCGTGA TCGGCCACCT GCTGCCGGCC ACCTACTTCA TGGACCTGAT CAAGACGCTG TTCCTCGCGG GCGACGTCTG GCCGCTGATC TGGCGCAACT GCGCGGTCCT CGTGGCCTAT GCCGTGGGCC TGCTGCTGCT GGCCCGCATG GTCACGCGCA AGAGCCTGGA CTGA
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Protein sequence | MSGFGTRLVS LTRKEFRQLL RDRSNLAIGI LLPMVLILIF GYGMSLDVKN APVAVVLEDS SPMAHEAIAG LQLSPTIAPV LLGSMRDAEA LMRERKVDGI VRVPADFSRA LAAGDARVQL IVHGADAGRA TIIQAYVSSA LAQAALRQAD RGGAAGAAAP SAGRVTVEQR MWFNAANTST WYLVPGLIVL IMTLIGAFLT ALVMAREWER GTLEALFVTP VRPVEILLAK IIPYFAVGML GLALCLLAAR FLFAVPMVGS LFAVVLSSML YLIVAVSLGL VISSVTRNQF LASQVALIAT FMPSMMLSGF LFDLRNVPTA VRVIGHLLPA TYFMDLIKTL FLAGDVWPLI WRNCAVLVAY AVGLLLLARM VTRKSLD
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