Gene Vapar_1739 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1739 
Symbol 
ID7974481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1872322 
End bp1873455 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content69% 
IMG OID644792338 
ProductABC-2 type transporter 
Protein accessionYP_002943655 
Protein GI239814745 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGGCT TCGGCACCCG GCTCGTCTCG CTCACGCGCA AGGAATTTCG CCAGCTGCTG 
CGCGACCGCA GCAACCTGGC CATCGGCATC CTGCTGCCCA TGGTGCTGAT CCTGATCTTC
GGCTATGGCA TGTCGCTCGA CGTGAAGAAC GCGCCGGTGG CCGTGGTGCT CGAAGATTCC
TCGCCGATGG CGCACGAGGC CATTGCCGGC CTGCAGCTCT CGCCCACCAT CGCACCCGTG
CTGCTGGGCT CGATGCGCGA CGCCGAGGCC CTGATGCGCG AGCGCAAGGT CGACGGCATC
GTGCGCGTGC CCGCCGACTT CTCGCGCGCG CTGGCCGCGG GCGATGCGCG CGTGCAGCTC
ATCGTGCATG GCGCCGACGC GGGGCGCGCC ACCATCATCC AGGCCTATGT GAGCAGCGCG
CTGGCGCAAG CGGCCCTGCG CCAGGCCGAC CGCGGCGGCG CGGCCGGTGC GGCCGCGCCT
TCGGCGGGCC GCGTGACGGT GGAGCAGCGC ATGTGGTTCA ACGCCGCGAA CACCAGCACC
TGGTACCTGG TGCCCGGGCT CATCGTGCTC ATCATGACGC TGATCGGCGC CTTTCTCACC
GCGCTGGTGA TGGCCCGCGA ATGGGAGCGC GGCACGCTCG AGGCGCTGTT CGTCACGCCG
GTGCGGCCGG TGGAAATCCT GCTGGCCAAG ATCATTCCGT ATTTCGCGGT CGGCATGCTG
GGCCTGGCGC TGTGCCTCCT GGCCGCGCGC TTCCTGTTCG CGGTGCCGAT GGTCGGCTCG
CTGTTCGCGG TGGTGCTCAG CTCGATGCTC TACCTGATCG TGGCGGTGAG CCTGGGGCTG
GTGATCTCGT CGGTCACGCG CAACCAGTTT CTCGCGAGCC AGGTGGCGCT GATCGCCACC
TTCATGCCTT CGATGATGCT GTCGGGCTTC CTGTTCGACC TGCGCAACGT GCCCACCGCC
GTGCGCGTGA TCGGCCACCT GCTGCCGGCC ACCTACTTCA TGGACCTGAT CAAGACGCTG
TTCCTCGCGG GCGACGTCTG GCCGCTGATC TGGCGCAACT GCGCGGTCCT CGTGGCCTAT
GCCGTGGGCC TGCTGCTGCT GGCCCGCATG GTCACGCGCA AGAGCCTGGA CTGA
 
Protein sequence
MSGFGTRLVS LTRKEFRQLL RDRSNLAIGI LLPMVLILIF GYGMSLDVKN APVAVVLEDS 
SPMAHEAIAG LQLSPTIAPV LLGSMRDAEA LMRERKVDGI VRVPADFSRA LAAGDARVQL
IVHGADAGRA TIIQAYVSSA LAQAALRQAD RGGAAGAAAP SAGRVTVEQR MWFNAANTST
WYLVPGLIVL IMTLIGAFLT ALVMAREWER GTLEALFVTP VRPVEILLAK IIPYFAVGML
GLALCLLAAR FLFAVPMVGS LFAVVLSSML YLIVAVSLGL VISSVTRNQF LASQVALIAT
FMPSMMLSGF LFDLRNVPTA VRVIGHLLPA TYFMDLIKTL FLAGDVWPLI WRNCAVLVAY
AVGLLLLARM VTRKSLD