| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1736 |
|---|
| Symbol | |
|---|
| ID | 7974478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1868601 |
|---|
| End bp | 1869653 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644792335 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002943652 |
|---|
| Protein GI | 239814742 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA AAACCCATCT CCTGCCCGGC CCCGACGTTC ACGGCCTGCG CGAACTCCCG
GGCCTTCGGG TCGAGGGCTA CAGCCTGCAG TTGCGCGACA AGGACGGCTT CGTGGGCGAC
CAGGCCAGCC AGACGGCCTT CAGGGAACTG CTCGAGCGCT GGCGCAAGCG CCGCCGCAAG
ACGGGCACCG ATCCATTGGG CAGGGAACAC TCGCGCGACC TCAGCAAGAA GCAGCTCGAC
CGCGTGCTGC TGAAGACCTC GGCGGCCGGC GACCTGATGC ACGGCGCCAT CGAGGAGTTC
GCCGAGGAAC TGGCCCTCGT GATCCAGCGC TTCACGCGCC AGCCCTCATG GAAGAAGGTG
GAGCGCATCG TGGTGGGCGG CGGCTTCACC GAAAGCGACG TGGGCGAGCG CGCCATCCTG
CAGACCGCCG CCATCCTCGA GGAGCTGGGC GTTCACGTCC AGCTCGGGCG CCTGTCGCAC
GAGGTCGACG ACGGCGGCCT GATCGGCTGG GTGCACCTGG CACCGCCGGC CATGCTCAAG
AAGCACGACG CCATCCTGGC GGTGGACATC GGCGGCACCA ACGTGCGCTG CGGCATCGTG
AAGACGCGCC GGCGCAAGGC ACGCGACCTG TCGCTTGCCA AGGTGGTGCG GCGGGAGAAA
TGGCGGCATG CGGACGACGA CCCGAACCGC ACCGGCATGG TCGAGCGCAT CGCGGCCATG
CTCGAGGACA TGGTGCGCTA CTGCGAGCGC AAGCACATCC GCCTGGCGCC CTTCATCGGC
ATTGCCTGCC CCGGGCTGAT CCGCAAGGAC GGTTCGATCG AGCGCGGCAC GCAGAACCTG
CCGGGCGATT GGGAAAGCCG CGCGTTCCAC CTGCCGAGCG CGCTGTGGCG GCGCATGCCG
ATGATCGGCT CCGGCCCCAC GCTGATCCTG ATGCACAACG ACGCGGTGGT GCAGGGGCTG
AGCGAACTGC CCTTCATGCG CGACGTGACC CACTGGGGCG TGCTGACGAT CGGCACCGGG
CTCGGCAATG CGAGCTTCAC CAACACCTTC TAG
|
|---|
| Protein sequence | MKKKTHLLPG PDVHGLRELP GLRVEGYSLQ LRDKDGFVGD QASQTAFREL LERWRKRRRK
TGTDPLGREH SRDLSKKQLD RVLLKTSAAG DLMHGAIEEF AEELALVIQR FTRQPSWKKV
ERIVVGGGFT ESDVGERAIL QTAAILEELG VHVQLGRLSH EVDDGGLIGW VHLAPPAMLK
KHDAILAVDI GGTNVRCGIV KTRRRKARDL SLAKVVRREK WRHADDDPNR TGMVERIAAM
LEDMVRYCER KHIRLAPFIG IACPGLIRKD GSIERGTQNL PGDWESRAFH LPSALWRRMP
MIGSGPTLIL MHNDAVVQGL SELPFMRDVT HWGVLTIGTG LGNASFTNTF
|
|---|
| |