| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1721 |
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| Symbol | |
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| ID | 7974463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1852058 |
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| End bp | 1853647 |
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| Gene Length | 1590 bp |
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| Protein Length | 529 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644792320 |
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| Product | galactarate dehydratase |
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| Protein accession | YP_002943637 |
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| Protein GI | 239814727 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2721] Altronate dehydratase |
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| TIGRFAM ID | [TIGR03248] galactarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0799571 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATC CGAACACCCG AGCACCGCAC TTCATCCGCA TGCACGCGGC GGACAACGTC
GCCATCGTGG CCAACGACGG CGGCCTGCCC GCCGGCACCG TGCTCGCGTC CGGCCTGGTG
CTGGTCGACA AGGTGCCCCA GGCGCACAAG GTGGCGCTCG AGGACATTCC CGAAGGCGGC
GTGGTGCGGC GCTACAACGT GCCGATCGGC TATGCCCTGA AGCCGATCCC GGCCGGCAGC
TGGGTGCACG AACGCCTGCT GCAGATGCCC GCCGCGCGCG AGCTCGAAGG CCTGCCGATC
GCCACCGTGC GTCCGCCCGC GCAGCCGCCG CTCGAGGGCT ACACCTTCGA GGGCTACCGC
AACCTCGACG GCTCGGTGGG CACGCGCAAC ATCCTCGCCA TCACGCAGAC CGTGCAGTGC
GTGGCGGGCG TGGTCGACTT TGCCGTGCAG CGCATCAAGG CCGAGCTGCT GCCCAAGTAC
CCCAACGTCG ACGACGTGGT GGGCCTCTCG CACAGCTACG GCTGCGGCGT GGCCATCGAT
GCGCCCGACG CCGTCATCCC GATCCGCACG CTGCGCAACA TCAGCCTCAA CCCGAACTTC
GGCGGCGAGG TGATGGTCAT CAGCCTGGGC TGCGAGAAGC TGCAGCCCGA GCGCCTGCTG
CCGCCTGGCA GCATCGCGCT GGTGGACGAG CGCAACGTGG CCGACGTCGG CGAAACGGCC
AACGCCAAGC TCGACGTGGT GTGCCTGCAG GATGACGCGC ACGTCGGGTT CATGTCGATG
ATCGATTCGA TCATGCGGCA GGCCGAAGAG CACCTGGAGC GGCTCAACGC CCGCCGGCGC
GAGACCGTGC CCGCGAGCGA GCTGGTGGTG GGCGTGCAGT GCGGCGGCAG CGATGCCTTC
TCGGGCGTCA CGGCCAACCC GGCCGTGGGC TTTTGCACCG ACCTGCTGGT GCGCGCCGGC
GCCACCGTGA TGTTCTCGGA AGTGACCGAG GTGCGCGACG GCATCGACCA GCTCACCTCG
CGCGCCACCA CGCCCGAGGT GGCCGAGGCC ATGATCCGCG AGATGGCCTG GTACGACGCC
TACCTGGACC GCGGCCGCGT CGACCGCAGC GCCAACACCA CGCCCGGCAA CAAGAAGGGC
GGGCTCTCGA ACATCGTCGA AAAGGCGATG GGCTCGATCG TCAAGAGCGG CAGCGCGCCG
ATCTCGGGCG TGGTTGCGCC GGGCGAGAAA GCGAAGCAAA AGGGCCTGCT CTACGCCGCC
ACGCCCGCCA GCGACTTCAT CTGCGGCACG CTGCAGCTGG CCGCCGGCAT GAACCTGCAT
GTGTTCACCA CCGGCCGCGG CACGCCCTAC GGCCTGGCCG AGGTGCCGGT GATCAAGGTG
GCCACGCGCA GCGACCTGGC GCGCCGCTGG CACGACCTGA TGGACGTGAA CGCGGGCCGC
ATCGCCGACG GCGACGCCAC CATCGAGGAC ATCGGCTGGG AGATGTTCCG CCTGATGCTC
GACGTGGCCA GCGGCCGCAA GAAGACCTGG GCCGAACAGT GGAAGCTGCA CAACGCGCTT
GTGCTGTTCA ACCCGGCCCC CGTGACCTGA
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| Protein sequence | MTDPNTRAPH FIRMHAADNV AIVANDGGLP AGTVLASGLV LVDKVPQAHK VALEDIPEGG
VVRRYNVPIG YALKPIPAGS WVHERLLQMP AARELEGLPI ATVRPPAQPP LEGYTFEGYR
NLDGSVGTRN ILAITQTVQC VAGVVDFAVQ RIKAELLPKY PNVDDVVGLS HSYGCGVAID
APDAVIPIRT LRNISLNPNF GGEVMVISLG CEKLQPERLL PPGSIALVDE RNVADVGETA
NAKLDVVCLQ DDAHVGFMSM IDSIMRQAEE HLERLNARRR ETVPASELVV GVQCGGSDAF
SGVTANPAVG FCTDLLVRAG ATVMFSEVTE VRDGIDQLTS RATTPEVAEA MIREMAWYDA
YLDRGRVDRS ANTTPGNKKG GLSNIVEKAM GSIVKSGSAP ISGVVAPGEK AKQKGLLYAA
TPASDFICGT LQLAAGMNLH VFTTGRGTPY GLAEVPVIKV ATRSDLARRW HDLMDVNAGR
IADGDATIED IGWEMFRLML DVASGRKKTW AEQWKLHNAL VLFNPAPVT
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