| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1682 |
|---|
| Symbol | |
|---|
| ID | 7974750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1814274 |
|---|
| End bp | 1815230 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644792281 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002943598 |
|---|
| Protein GI | 239814688 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.423986 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCCC TGCCGCTCCG GGCGCTCACG CTGCGCCAGC TTCAGTTCTT CTCTGTGCTG
GTGGAAGAAG GGCACTTCGG CCGCGCGGCG CGCCGGCTGG CCATCACCCA GCCGGCGCTC
AGCAACGCGA TCAAGCAGAT GGAAAAACTG CTCGGCGCCG AGCTGCTGAC CCGTTCCACC
CACCGCCTCG AGCTCACGCC GGTGGGCGCC GAGGTGCTGG CGCGCACCGA TTTCCTGGTC
AACACCTTCG AGGTGGCGCT GCGCGACATC GAGAGCACCG TGCAGCGCGG CCGGGCTTTC
GTGCGCGTGG GCGTGATCCC GTCGGCCAGC GCGCGCGTGA TGGCCGCGGC CAGCGAGTTC
CTCCAGGCCG GCGCGCGCGA GCTCGAGATC GCCTGGCGCG ATGCGCCTTC GACCACCTTG
CTGGCCGAAC TGCGCAGCGG CCAGCTCGAC ATGGCGGTGG CCGCCATCAC CGAGCCGCCG
GGCGGGCTGG CCTGCGTCGA CCTGTTCCGC GATCCGCTGG TGCTGGTGGT GCGCCGCGGC
CATGCGCTGG CGGCGGCCGG GGACGCGAGC TGGGAGGCCA TCGGCAAGGA ACGGCTGGTG
CTGTTCGAGA GCGGCAGCAT GCCGGCGCTC GGCAACCCGG CGCGCGCGCA GTTCGAGCAA
GGCCCCGAGC CCTACCGCGT GAGCTATTCC GAAACGCTCT ATGCGCTGGT GCGCAGTGGC
CAGGCGCTGG GGCTGATGCC GCGGCTCTAC ACCACGCTGC TGCGCGACCC CGAACTGGTG
GTGCTGCCGC TCTTGAAGCC GCGCGTCGAG CGCCGCGTGG TGCTGGCCTA CCTGCCGGGG
CCGATGCGCA ACGTGGCGGC GCAGGAACTG ATCGCGTTCC TGCGCGAGCG GCTGCCGCAG
GCGGGCGAAG CGGCGGTGCG GCGCGTGGCC TCGAAGGAGC GGCGCAGCCG GCGCTGA
|
|---|
| Protein sequence | MASLPLRALT LRQLQFFSVL VEEGHFGRAA RRLAITQPAL SNAIKQMEKL LGAELLTRST
HRLELTPVGA EVLARTDFLV NTFEVALRDI ESTVQRGRAF VRVGVIPSAS ARVMAAASEF
LQAGARELEI AWRDAPSTTL LAELRSGQLD MAVAAITEPP GGLACVDLFR DPLVLVVRRG
HALAAAGDAS WEAIGKERLV LFESGSMPAL GNPARAQFEQ GPEPYRVSYS ETLYALVRSG
QALGLMPRLY TTLLRDPELV VLPLLKPRVE RRVVLAYLPG PMRNVAAQEL IAFLRERLPQ
AGEAAVRRVA SKERRSRR
|
|---|
| |