Gene Vapar_1621 details

Gene Information

• Locus tag: Vapar_1621
• ID: 7974850
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1752789
• End bp: 1753442
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644792221
• Product: OmpA/MotB domain protein
• Protein accession: YP_002943538
• Protein GI: 239814628
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAC TGAATAAAGT GGCGATGATG TTTGCAGTCG CTGCGCTCGC CACTGCCGCC 
GGCGCGCAGA CCCGTGTCAC CGCTGCGGAC GGCGGTCCTA CGATCGACAA CTGGCAAAAC 
GGCACCGGCG AACTGGTTTG GAAGAACGGC ACGAACGAAC TGTGCTGGCG TGATGCCAAC 
TGGACGCCGG CTACTGCCGC CGCCGGTTGC GACGGTGCTC TGGTTCCGGC TCCCGCCGCG 
ACGCCTCCTG CCGCTGTGAC GCCGCCTGCC GCTGTCGCAC CGCCGGCCGT GGCTGCCTCG 
AAGGTCACCT TCGCTGCCGA CGCATTCTTC GATTTCGACA AGTCGGTTCT CAAGCCTGAA 
GGTCGCGCCA AGCTGACCGA CCTGGTTTCG AAGATCCGCG ACGTCAACCT CGAAGTGATC 
ATCGCCGTGG GCCACACCGA CTCGATCGGT TCGGACGCCT ACAACCAGCG TCTGTCGGTG 
CGCCGCGCCG AAGCCGTCAA GGCCTTCCTG GTCTCGAAGG GCATCGAACG CAACCGCGTC 
TACACCGAAG GCAAGGGCGA GAAGCAGCCT GTTGCGGACA ACCGCACCAA GGAAGGCCGC 
GCCAAGAACC GTCGCGTGGA AATCGAAGTG GTCGGCACCC GCGCCACCAA GTGA 

 

Protein sequence

MKKLNKVAMM FAVAALATAA GAQTRVTAAD GGPTIDNWQN GTGELVWKNG TNELCWRDAN 
WTPATAAAGC DGALVPAPAA TPPAAVTPPA AVAPPAVAAS KVTFAADAFF DFDKSVLKPE 
GRAKLTDLVS KIRDVNLEVI IAVGHTDSIG SDAYNQRLSV RRAEAVKAFL VSKGIERNRV 
YTEGKGEKQP VADNRTKEGR AKNRRVEIEV VGTRATK