| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1576 |
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| Symbol | |
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| ID | 7974805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1704701 |
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| End bp | 1706152 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644792176 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002943493 |
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| Protein GI | 239814583 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCTG CGGTGCATAG CGATATTCCC GCCCGTCTCG ACCGCCTGCC GTGGTCGCGC
TGGCACTGGC GCGTGGTGGT TGCGCTCGGC GTGGCCTGGG TGCTCGACGG CCTCGAGGTG
ACGCTTGTCG GCTCGATCGG CGCCGTGCTC GAGCGGCCCG ACACACTCGG GCTCAGCGCC
GGCGAGATCG GCTGGTCGGG CTCGATCTAC ATCGCGGGCG CGGTGATCGG CGCCCTGCTC
TTCGGCCGCC TGACCGACCG GCTCGGGCGC AAGAAGCTGT TCCTGGTCAC GCTGGTGGTC
TACACCCTGG GCACGCTGGC CACCGCGTTC TCGCCGGACT TCGCTTTCTT TGCGCTGTGC
CGCTTCATCA CGGGCCTGGG CATCGGCGGC GAATATGCGG CCATCAATTC CGCCATCGAC
GAGCTGATTC CGGCGCGCGT GCGCGGCCGC GTCAATCTCG CAATCAACGG CAGCTTCTGG
ATCGGCGCGG CGCTGGGGGC CGGGCTCAGC CTGGTGCTGC TCGATGCGCG CGTGATCGGT
CCGGTGTGGG GCTGGCGCGC GGGTTTCGCG CTGGGCGCGG TGCTGGCGGT GGCCATCCTG
CTGGTGCGGC GCCACGTGCC CGAAAGCCCG CGCTGGCTGA TGGCGCATGG CCGCGCCGAC
GAGGCGCTGC GCATCGTCGA GACCATCGAG GCCGAGGTCC GCGCGCAGCA CGGCCCGCTG
GCGCTGGCCG AGGGCCGCGT GGCCTACGGC GGCGGGCACC ACCGCAGCCC GTCGATGCGC
GAGGTGGCGC ACGTGCTGCT GCGCCGCTAC CGCGCGCGCA GCGTGGTCGC GGTGGCGCTG
ATGGTTTCGC AGGCCTTCTT CTACAACGCG ATCTTCTTCA CCTATGCGCT GGTGCTCACG
CGCTTCTACG GCGTGGCCGA GGACAACGTG GCGCTCTACA TCTTTCCGTT CGCGCTTGGC
AATGTGCTCG GGCCGCTGCT GCTGGGCCCG CTGTTCGACA GCGTGGGGCG GCGCAAGATG
ATCGCGCTGA CCTACGTGCT CGCGGGCGTC GGGCTCGCGT TCACCGGCTG GGCCTTCATG
ATGGGCTGGC TCGACGCGCG CAGCCAGGCG CTGTGCTGGT CGGCGGTGTT CTTCCTGGCC
TCGGCCGCGG CGAGCTCGGC CTACCTCACG GTCAGCGAAG TGTTCCCGCT CGAGATGCGC
GCCATGGCCA TCGCGATCTT CTACGCCATC GGCATGGGCG CGGGCGGCTT CGTGGCGCCG
GTGCTGTTCG GCGTGCTGAT CGAGACCGGC AGCCGCGGCG CGGTGATGGT GGGCTACGCG
ATCGGCGCCA CGCTGGTCAT CGTTGCGGGA CTGCTCGCGC TGCGCTATGC GGCCGATGCG
GAGTGCAAGC CGCTCGAGGA AGTGGCGCCG CCGCTGTCGT CGGAGATCGG GAGCACCGGG
ATCGGCGACT AG
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| Protein sequence | MTAAVHSDIP ARLDRLPWSR WHWRVVVALG VAWVLDGLEV TLVGSIGAVL ERPDTLGLSA
GEIGWSGSIY IAGAVIGALL FGRLTDRLGR KKLFLVTLVV YTLGTLATAF SPDFAFFALC
RFITGLGIGG EYAAINSAID ELIPARVRGR VNLAINGSFW IGAALGAGLS LVLLDARVIG
PVWGWRAGFA LGAVLAVAIL LVRRHVPESP RWLMAHGRAD EALRIVETIE AEVRAQHGPL
ALAEGRVAYG GGHHRSPSMR EVAHVLLRRY RARSVVAVAL MVSQAFFYNA IFFTYALVLT
RFYGVAEDNV ALYIFPFALG NVLGPLLLGP LFDSVGRRKM IALTYVLAGV GLAFTGWAFM
MGWLDARSQA LCWSAVFFLA SAAASSAYLT VSEVFPLEMR AMAIAIFYAI GMGAGGFVAP
VLFGVLIETG SRGAVMVGYA IGATLVIVAG LLALRYAADA ECKPLEEVAP PLSSEIGSTG
IGD
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