| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1570 |
|---|
| Symbol | |
|---|
| ID | 7974799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1696675 |
|---|
| End bp | 1697592 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644792170 |
|---|
| Product | Polyprenyl synthetase |
|---|
| Protein accession | YP_002943487 |
|---|
| Protein GI | 239814577 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGG TTCAAGCGGT GGAATGGGAT GCCGCGCGCC TGGCCAGCTG GAGCGACCCG
CACCTGGCGC GCGTCGAGGC GGCGCTGTCG CGCTGGGTCG GCGTCGATGC GCCGGTGCTG
CTCGGCGATG CCATGCGCTA TGCCGTGCTC GACGGCGGCA AGCGGCTGCG GCCGCTCCTG
GTGCTGGCCG CGAGCGAAGC GGTCGGCGGC AATGCGGCTG CGGCGCTGCG TGCGGCCTGC
GCAACCGAGC TGATCCACGC CTACTCGCTG GTGCACGACG ACCTGCCGAG CATGGACAAC
GACGTGCTGC GGCGTGGCAA GCCCACGGTG CACGTGAAGT TCGGCGAAGC CGACGCGCTG
CTGGCCGGCG ACGCCCTGCA GGCCCTGGCC TTCGAGCTGC TCACGCCCGA GGGCGACGAG
ATTCCCGCAT CGATCCAGGC CGCGCTGTGC CGTCTGCTCG CGCGCGCCGC GGGCAGCCAG
GGCATGGCGG GCGGGCAGGC GATCGACCTG GCCAGCGTGG GCCTCGCGCT GGACGAAGCG
CAGCTGCGCG AAATGCACCG CCTGAAGACC GGCGCGCTGC TGCAGGGCAG CGTCGAGATG
GGCGCGGCCT GCGCCGGCGC CGTGGCGCCC GCGGCGCTCT CTGCCCTGCG CGACTATGGC
GCCGCCATCG GCCTGGCGTT CCAGGTGGTC GACGACATCC TCGACGTCAC GGCCGATTCG
CAGACCCTCG GCAAGACGGC CGGCAAGGAT GCGGCCGCCG ACAAGCCCAC CTATGTTTCG
CTGTGGGGCC TGGACGGTGC GCGTGCGCAG GCAAGGCAGC TGCTGGCCGA ATCGCTCGCG
GCGCTGGACC GCAGCGGCCT GGCCGACACC GCGGCCTTGC GCGCGCTGGC CCACATGGTC
GTCGACCGCG ACCGATGA
|
|---|
| Protein sequence | MSAVQAVEWD AARLASWSDP HLARVEAALS RWVGVDAPVL LGDAMRYAVL DGGKRLRPLL
VLAASEAVGG NAAAALRAAC ATELIHAYSL VHDDLPSMDN DVLRRGKPTV HVKFGEADAL
LAGDALQALA FELLTPEGDE IPASIQAALC RLLARAAGSQ GMAGGQAIDL ASVGLALDEA
QLREMHRLKT GALLQGSVEM GAACAGAVAP AALSALRDYG AAIGLAFQVV DDILDVTADS
QTLGKTAGKD AAADKPTYVS LWGLDGARAQ ARQLLAESLA ALDRSGLADT AALRALAHMV
VDRDR
|
|---|
| |