Gene Vapar_1517 details

Gene Information

• Locus tag: Vapar_1517
• ID: 7973116
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 1638249
• End bp: 1638833
• Gene Length: 585 bp
• Protein Length: 194 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644792116
• Product: peptidase A24A prepilin type IV
• Protein accession: YP_002943434
• Protein GI: 239814524
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4960] Flp pilus assembly protein, protease CpaA

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGGAAT TCAACGCCGT CCTCGATCTG CTGGCCATGC TGGCCTCGGA CTTCCGCATG 
GGCGGGCTCT TCGTGCTGCT GGTGATGGCC GCCGTGAGCG ATGCGCGCTT CTACCGCATT 
CCCAACTGGC TGACCTTCGG CGGCATGGCC TTCGCGATCA TCTACGGCGC CTTCGCGGCG 
CGCACCCCGA TGACCGGCCT GCAGCACGCC CTGGGCGGCC TGGGCACCGG GTTCGCGATC 
ATGCTGCCGT TCTACGTGCT GGGGATCATG GGTGCGGGCG ACGTCAAGCT GATGGCGATG 
GTCGGTGCCT TCATCGGCCC CTACCAGACG CTGGAGGCCA TTCTCTTCAC CTGCATCGCG 
GGCGGCTTCG CGGCCGTGGC GGTGGCCATC CACCGGCGGC GGCTCGGCCA CATGCTGGCC 
AACGTCAAGG ATGCGGCGCA GGGCATCGTC GTCTCGGGCA TTGCGGGCGT GCGGCCGAAC 
GGAACGATCG ACACGCGGCA ATCCATCGGA AAGCTGCCTT ACGGCATCTG TATTTGCGTG 
GGGACGGTTG TACAGGTCCT GGCGCATCAG TTGGGCTTCG TCTAG 

 

Protein sequence

MQEFNAVLDL LAMLASDFRM GGLFVLLVMA AVSDARFYRI PNWLTFGGMA FAIIYGAFAA 
RTPMTGLQHA LGGLGTGFAI MLPFYVLGIM GAGDVKLMAM VGAFIGPYQT LEAILFTCIA 
GGFAAVAVAI HRRRLGHMLA NVKDAAQGIV VSGIAGVRPN GTIDTRQSIG KLPYGICICV 
GTVVQVLAHQ LGFV