| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1501 |
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| Symbol | |
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| ID | 7973099 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1624009 |
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| End bp | 1625154 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644792099 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002943418 |
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| Protein GI | 239814508 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.225006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACAGA ACCTGACCCG AATCCTGGCA CTCACCGCAG CAGCACTCGC GACCACGCAA
GCCATGGCGG CCGACCTGAA GATCGGTTTC ATCAGCTCGC TCTCGGGCCC GGTCGCTGCA
CTGGGCGTAC CGTACGAGAA GGGCATTCGC GCCGCCATTG CCGAGCATCC CGAGATCGGC
GGCCGCAAGG TCCAGCTGAT CGTGCTCGAC GACGCCTCCG ACCCCACCAC CGCCGGGCGC
AACGCGCGCA AGCTCGTGGT GGAAGACAAG GTCGACGTGC TCATCGGCAC CTCGGGCGTG
CCGGGCGCAA TGGCCATTGC GTCCGTGGCG CGGGAACTCA ACACGCCGCT GATCTCGCCC
ACGCCCGTCA CCATCCCTGG CCCCGAAGGC GCATGGACCG TGACCGTGTC GCAGCCGTTC
CAGCTCATGG TCGCGGGCGT GGTCGAGCGC ATGCAGAAGT CGGGCGTGAA GACCGTCGCC
TTCATCGGTT TTTCCGACGC GCTGGGCGAC CTGGCCTACG ACTCGCTCGT GAAGAGCGCC
GAGAAGGCCG GCATCAAGGT GGTGGCGAAC GAGCGCTATG CGCGCAGCGA CTCGTCGGTG
GCCGGGCAGG TGCTCAAGAT CGTCGCGCAG CGGCCCGATG CGGTGTTTGC CGGCAACTCG
GGCACGCCCG GCGCGCTGCC CTACCTCGCG CTCGCCGAGC GCGGCTACAA GGGCAAGATC
TACGGCACGC ACGGCCTCAT CAACGCCGAC TTCGTGCGCG TGGGCGGCGC TTCCATCGAA
GGCCTGCAGG TGCCCAGCGG CCCCGTGCTG GTGGCCGACC AGTTGCCCGA CAGCAACCCG
ATCAAGAAGG TGTCGATGGG TTTTCGCAGC GCCTACCAGA AGGTCAACGG CGCGGTGCCG
ACCGATGCCT TCTCGTCCTA CACGTACGAC GCCTACCTGC TGCTGGCCGA TGCCGCCTCG
CGCACCAAGG GCGAACCGGG CACGCCGCAG TACCGCAGCG CACTGCGCGA CGCCATCGTG
GCCACCCGCG AGCTGGTGGG CACGCACGGC ATCTACACCT TCAAGCCCGA CGACCGCTAT
GGCTCCGACC AGCGCGGCGT GGTGATCGTG CAGATGAACA AGGGCCAGTG GAAGCTGGTC
CCCTGA
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| Protein sequence | MKQNLTRILA LTAAALATTQ AMAADLKIGF ISSLSGPVAA LGVPYEKGIR AAIAEHPEIG
GRKVQLIVLD DASDPTTAGR NARKLVVEDK VDVLIGTSGV PGAMAIASVA RELNTPLISP
TPVTIPGPEG AWTVTVSQPF QLMVAGVVER MQKSGVKTVA FIGFSDALGD LAYDSLVKSA
EKAGIKVVAN ERYARSDSSV AGQVLKIVAQ RPDAVFAGNS GTPGALPYLA LAERGYKGKI
YGTHGLINAD FVRVGGASIE GLQVPSGPVL VADQLPDSNP IKKVSMGFRS AYQKVNGAVP
TDAFSSYTYD AYLLLADAAS RTKGEPGTPQ YRSALRDAIV ATRELVGTHG IYTFKPDDRY
GSDQRGVVIV QMNKGQWKLV P
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