Gene Vapar_1462 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1462 
Symbol 
ID7971290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp1585484 
End bp1586110 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content71% 
IMG OID644792060 
ProductThiJ/PfpI domain protein 
Protein accessionYP_002943379 
Protein GI239814469 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0961162 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCTTGC GTGTTCGAAT CCTCGCCTAC GACGGCGTCG AGGCCCTCGA CTTCGCGGGG 
CCGTTCGAGG TGTTCACCAC CGCAAGCCGC GTGAGCCAGC GCATGAATCC CGGCGCGCCG 
GCGCCTTTCG AGGTCGCCTC GGTGGCGCTG GGCGCCCACC AGCCCGTGCA GGCGCGCGCC 
GGCCTGCGCC TGCTGGCCGA CCACGACCTG GCCGCGGATC CCAGGGCCGA CCTGCTGGTG 
GTGCCCGGCG GCGTGGTCGA TGCCCCGATG GCGAGCCCCG CCACCCTGCG CTGGATCGCC 
GATTGCGCGG CCGGCGCGCA GCTGGTCGCC TCGGTCTGCA CCGGCGTCTT CCTGCTCGCC 
AAAAGCGGCG TGGCCGTGCG CGAAGCCGTC ACCACGCACT GGGAAGACAT CGCGGACCTG 
CGCGAGCAGT TCCCCTTGCT CGACGTGCAC GAAAACGAGC GCTGGGTCGA CAGCGGCCGC 
ATCGTCAGCT CCGCGGGCAT CAGCGCGGGC ATCGACATGA GCCTTTACCT GGTCGAACGG 
CTGGCCGGCC GCGCGCTGGC CGAACGCACC GCGCGCCAGA TGGACTACGC ATGGATCTCC 
AGCAGCAGCA AAAGCCCATC CGCGTAG
 
Protein sequence
MTLRVRILAY DGVEALDFAG PFEVFTTASR VSQRMNPGAP APFEVASVAL GAHQPVQARA 
GLRLLADHDL AADPRADLLV VPGGVVDAPM ASPATLRWIA DCAAGAQLVA SVCTGVFLLA 
KSGVAVREAV TTHWEDIADL REQFPLLDVH ENERWVDSGR IVSSAGISAG IDMSLYLVER 
LAGRALAERT ARQMDYAWIS SSSKSPSA