| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1418 |
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| Symbol | |
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| ID | 7971246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1539280 |
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| End bp | 1542081 |
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| Gene Length | 2802 bp |
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| Protein Length | 933 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644792016 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_002943335 |
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| Protein GI | 239814425 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGAC ATCTGTTGCC CGCGGCCCGC CCATCGGCCG CTCGCCCCTC CCTGCCCTTG
AACGGTCTTC GCCTCTCCGT TCTGGGCACG GCGGTTGCCG TGGTCCTGGG TATTGCAAGC
ACCGACGCCA GCGCTTTCGC GCTCGGGCAG CTGAAGGTGC AATCGGCGCT GGGCGAACCG
CTTCGCGCCG AAATCGACGT GACCGAAATG GCTGCCGCCG AAGCGGAAAG CCTGAAGATC
AACGTCGCCA GCGCCGATGC CTTCAAGAAC GCGGGCGTGC CGTACAACGC TGCGCTCAGC
GACGTCAAGG CCACGCTGCA GCGCCGCGCC GGCGGCCAGT ACGTGGTACG GCTCACCGGC
AGCCGTCCGC TCAACGATCC CTTCGTCGAC CTGCTGCTCG AAGCCAATGG TTCCTCGGGT
CGCATGGTGC GCGACTACAC CGTGCTGCTC GATCCGCCGG CCACCCGCCA GGCGGCGCCG
AGCGCGCCCA TCGCGCCCGC CACGCCCCAG GTGAGCACGC CGCCCGCGGA GCGTCCGGCT
GCCGCGGCAG CCCGCGCGCG CCGCGAGCGC GCGCCCGTCG CACCGGTCAC CGCTCCCACG
GCACCAGCAG CGCCTGCCGC TGCCGCACCG CAGGCGCCCA GCGCCGCAGC ACCGGCCCGC
CCGGCTGGCG GCGGCGAACA GGTCACGGTC CAGCGCGGCG ATACCGCCAG CAAGATCGCC
GGGGCCCACA AGCCTGCCGA GGTTTCGCTC GACCAGATGC TGGTGGCAAT GCTGCTTGCC
AATCCCGATG CATTCGTTGG CGGCAACGTC AACCGCATGA GGGCCGGCGC CGTGCTCGAC
CTGCCGAGCG CCGCCGAAGC CAGCGCGATC CTGCCGTCGG AAGCGCGCCG CACCATCACC
GCGCAGAGCC GCGACTTCGG CGCCTACCGC CAGCGCCTTG CCGAGAACGC ACCCACGTCC
AACGTGGCCG CCGCCGACCG CAAGGCTTCG GGCAAGCTGC AGGCCAACGT CGAGGACCGC
AATGCCGCGG CAAGCGCGCC CGACAAGCTG ACGATCTCGC AGGGCGGCGC AGCAGCCCGC
GCCGCCGAAG AAAAGGTTGC ACAAGCCCGC CAGGCGCAGG ACAGCAACAA CCGCGTGGCC
GAGCTCTCGA AGAACATCAA CGAACTGGCC AAGCTCAAGG CAGCCACCGG TTCGGCAGCA
CCAGCCGCCG GCTCGGCGCC GGCACCCGCC CCGGCAGCGC CCGGCATTCC GGTTCCCAAC
CCGGGTGTCG CCGCAACCAC GGCACCGGCC GCAGCGGCGC CTGCTGCCGC CGCACCCGCC
CCGGCTGCTG CGCCTGCGGC CGCGTCCGCC GCCCCGGCCA CGACGCCTAC TGCCGCTTCG
GCACCAGCGG CACCGGCAGC GACTCCTGCA CCAGCGGCAC CGGCAGCTGC CGCTCCCGCC
GCTCCGGCGG CCGAGCCCGT GCCTGCTGCA ACTTCCGAGG CTGCGCCGGC CGCTCCCGCA
GCGGCGGCAA GCGCCCCGGC CGCCGCACCG GCACCCAAGC CGGTCGTCAA GGCAGCGCCT
CCGCCGCCCC CGGCCGAACG CGGCTTCTTC GAAGAGCTGA TGGACAACCC GCTGATGCTC
GGCGGCGCGG CGCTGATCGC CTTGCTGGTC GGCTTCCTGC TTTACCGTGT CCTGGGCCGC
CGCCGCGAAG AAATGAGCGA GAGCGTGTTC CTCGAAAGCC GCATTCCGAA GGATTCGTTC
TTCGGCGCCA GCGGCGGCGA ATCGGTCGAC ACCAAGCAGC GTGGCGATTC CACCGTGTCG
TCGCTGTCGT ACTCGCCGAG CCAGCTCGAT GCGGGCGATG TCGATCCCGT GGCCGAAGCC
GACGTGTACC TGGCCTACGG CCGCGACCTG CAGGCCGAGG AAATCCTGCG CGAAGCCCTG
CGCGTGAATC CGGACCGCAC GGCCATCCAC CTCAAGCTGC TCGAGATCCA TGCCAAGCGC
CGCGACGTGC GGGCCTATGA AGGCCTTGCC ACCGAAGTGC ACAAGCTGAC CAACGGCACC
GGTGCCGACT GGAACCGCGT GGTCGAGATG GGCAAGGATC TCGATCCGGG CAATCCGCTG
TACGACTCGG GGGCGCCCCG CGTGAGCCCG GCCGAAAGCG CTGCCTTTGC AGGCGCCCTG
GCCACGGCCG CGGCCAAACC TGCGCCGGCC CCGGTGGCGG CACCCGCCCC CGCGCCCGTC
GCGGCTACGC CGGCCTTCGT GCCCTCGGTC GCGCCGCTGG ACTTCGATCT GGACCTGAGC
CAGCCGCCGG CACCGGCGCC CGCGCCGGCC CCGGTGAGTG CCAGCCTGCC GAAGACGGCT
TATGCGCCGC CCGCCGCCAG CAGCGCACCG CTGTCCAACG GCCATGCACA TGCGCCCACG
GCACCGGTCG ACTTGGAAAA CGACTTCGAC ACCGCCCCCG GAGCGCTGTC GCCGATCACC
CGCCCCGGCG CGCTCGGCGA AGCCGATGCC AACACCCGGC CGGCCGGCCT GCGCGGCAAC
CTGCCAGCGG ACTCGGGCTT CATCGAGTTC GACATGAGTG CACTGGCCGG CCTGCCCGCC
CGCCAGGTGG CCGGTACCGC CGATGCAGCA GCCAGGCCCG CCGAAGTCGC GCAGGACGAC
GATGGCGACG AGAGCCCCCA TGCCGTCAAG CTGTCGCTGG CGCGCGAGCT GCAGGCGATC
GGCGACGTCG AAGGCGCCCG CTCGCTGGTC GAGGAAGTCG AAGCCGAAAG TGCCGGCGAC
CTCAAGTCGC AGGCGAGGCA ATTGCTCGCC GAGCTGCGCT GA
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| Protein sequence | MTRHLLPAAR PSAARPSLPL NGLRLSVLGT AVAVVLGIAS TDASAFALGQ LKVQSALGEP
LRAEIDVTEM AAAEAESLKI NVASADAFKN AGVPYNAALS DVKATLQRRA GGQYVVRLTG
SRPLNDPFVD LLLEANGSSG RMVRDYTVLL DPPATRQAAP SAPIAPATPQ VSTPPAERPA
AAAARARRER APVAPVTAPT APAAPAAAAP QAPSAAAPAR PAGGGEQVTV QRGDTASKIA
GAHKPAEVSL DQMLVAMLLA NPDAFVGGNV NRMRAGAVLD LPSAAEASAI LPSEARRTIT
AQSRDFGAYR QRLAENAPTS NVAAADRKAS GKLQANVEDR NAAASAPDKL TISQGGAAAR
AAEEKVAQAR QAQDSNNRVA ELSKNINELA KLKAATGSAA PAAGSAPAPA PAAPGIPVPN
PGVAATTAPA AAAPAAAAPA PAAAPAAASA APATTPTAAS APAAPAATPA PAAPAAAAPA
APAAEPVPAA TSEAAPAAPA AAASAPAAAP APKPVVKAAP PPPPAERGFF EELMDNPLML
GGAALIALLV GFLLYRVLGR RREEMSESVF LESRIPKDSF FGASGGESVD TKQRGDSTVS
SLSYSPSQLD AGDVDPVAEA DVYLAYGRDL QAEEILREAL RVNPDRTAIH LKLLEIHAKR
RDVRAYEGLA TEVHKLTNGT GADWNRVVEM GKDLDPGNPL YDSGAPRVSP AESAAFAGAL
ATAAAKPAPA PVAAPAPAPV AATPAFVPSV APLDFDLDLS QPPAPAPAPA PVSASLPKTA
YAPPAASSAP LSNGHAHAPT APVDLENDFD TAPGALSPIT RPGALGEADA NTRPAGLRGN
LPADSGFIEF DMSALAGLPA RQVAGTADAA ARPAEVAQDD DGDESPHAVK LSLARELQAI
GDVEGARSLV EEVEAESAGD LKSQARQLLA ELR
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