| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1410 |
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| Symbol | lysS |
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| ID | 7971238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1531594 |
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| End bp | 1533156 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644792008 |
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| Product | lysyl-tRNA synthetase |
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| Protein accession | YP_002943327 |
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| Protein GI | 239814417 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
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| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGACC ACCTGATCCC CTCCATTCCC ACGCCCGCCG CAGCTCCGGC CGCCGCGCCC
GCCGTCGACG ACAACCAGCT CATCGCGGAG CGCCGCGAAA AGCTCAAGCT GATGCGCGCC
GCCCAGGCCG AGGGCAAGGG GGTCGCGTTT CCGAACGACT TCAAGCCGGG CCACCGCGCC
GCCGCGCTGA TCGAGGCGCA TGGCGCCGCC GATGCCGAAG CGCTCGAGGC GCAAGCCGTT
GCCGTGAGCG TGGCCGGCCG CATGATGCTC AAGCGCGTGA TGGGCAAGGC CAGCTTCGCC
ACGGTGCAGG ATGCCACCAG CCGCATCCAG CTCTACGTCA CGCGCGATGC CATCGGCGAG
GAAGCCTACG CCGAGTTCAA GCGCTGGGAC CTGGGCGACA TCGTGGGCGC CGAAGGCACG
CTGATGAAGA CCAAGACCGG CGAGCTGTCG GTGAAGGTCA CCAAGCTGCG CCTGCTCACC
AAGAGCCTGC GCCCGCTGCC CGACAAGTTC CACGGCATGG CTGACCAGGA GCAGAAGTAC
CGCCAGCGCT ACGTCGACCT GATCACCGAC GAAACCGCCC GCGTGCGCTT CACCGCGCGC
AGCAAGGCCG TGAGCGCGCT GCGCGAATTC ATGGTGGGCC ACGGCTTCCT CGAAGTCGAG
ACGCCGATGC TGCACCCCAT TCCCGGCGGC GCCAACGCCA AGCCCTTCAA GACGCACCAC
AACGCGCTCG ACCAGGAGAT GTTCCTGCGC ATCGCGCCCG AGCTCTACCT GAAGCGCCTG
ATCGTCGGCG GCTTCGAGCG CGTGTTCGAA ATCAACCGGA GCTACCGCAA CGAGGGCATC
TCGGTGCGGC ACAACCCCGA GTTCACGATG ATGGAGTTCT ACGCGGCCTA CTGGAACTAC
CGCGACCTGA TGGACTTCAC CGAGACGCTG ATCCGCACCA TTGCCGACAA GGCCGTGGGT
ACGCAGCAGC TCACCTACCA GGGCAAGCCG GTCGACCTGA CCCAGCCCTT CGAGCGCCTG
ACGATCCGCG AAGCCATCCT CAAGTACACG GAAGCCGGCA CCGGCGTCGA CGACAGCGCC
TGGCTCATCA ACGCCCTGCG CAAGATCGGC CTCAGCGAAG AAAAGGACAA GCTCTCGCAG
CGCAGCCTCG CCAGCCTGCA GGTCATGTAC TTCGAAGAGA CGGTGGAAGA AAAGCTCTGG
CAGCCGACTT TCATCATGGA GCACCCGACC GAAATTTCGC CGCTCGCGCG CGCCAACGAC
GAGCGCCCCG AGGTCACCGA GCGCTTCGAG CTCTACATCA CGGGCCGCGA GTTCGGCAAC
GGCTTCAGCG AGCTCAACGA CGCCGAGGAC CAGGCCGCGC GCTTCAACGC GCAGGTGGCC
GCCAAGGACA GCGGCGACGA CGAGGCCATG TTCTACGACC ACGACTTCGT GCGTGCGCTC
GAATACGGCA TGCCGCCCAC CGGCGGCTGC GGCATCGGCA TCGACCGGCT GATGATGCTG
CTGACCGATT CGCCCAGCAT CCGCGACGTG ATCCTGTTCC CGGCGCTGCG CAGGGAATCT
TGA
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| Protein sequence | MSDHLIPSIP TPAAAPAAAP AVDDNQLIAE RREKLKLMRA AQAEGKGVAF PNDFKPGHRA
AALIEAHGAA DAEALEAQAV AVSVAGRMML KRVMGKASFA TVQDATSRIQ LYVTRDAIGE
EAYAEFKRWD LGDIVGAEGT LMKTKTGELS VKVTKLRLLT KSLRPLPDKF HGMADQEQKY
RQRYVDLITD ETARVRFTAR SKAVSALREF MVGHGFLEVE TPMLHPIPGG ANAKPFKTHH
NALDQEMFLR IAPELYLKRL IVGGFERVFE INRSYRNEGI SVRHNPEFTM MEFYAAYWNY
RDLMDFTETL IRTIADKAVG TQQLTYQGKP VDLTQPFERL TIREAILKYT EAGTGVDDSA
WLINALRKIG LSEEKDKLSQ RSLASLQVMY FEETVEEKLW QPTFIMEHPT EISPLARAND
ERPEVTERFE LYITGREFGN GFSELNDAED QAARFNAQVA AKDSGDDEAM FYDHDFVRAL
EYGMPPTGGC GIGIDRLMML LTDSPSIRDV ILFPALRRES
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