| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1368 |
|---|
| Symbol | |
|---|
| ID | 7973049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1488898 |
|---|
| End bp | 1490145 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644791966 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002943285 |
|---|
| Protein GI | 239814375 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.16217 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACTGCG CTGAACCGGC CCCCGCGCGC GGATGGCTCG CGCTGCTGTG CGCGAGCCGC
CTGCTGCAGG CCATGGTGGT CACCGCCTAT TCCGGCGTGC TGCCCTTCAT GATGGCCGAC
TGGCACATGA CGGCCGCGCA GGCCGGCTCG ATCCAGAGCG CATGGCACGT CGGCTACATG
AGCTCGCTGT TCACCGTGGG CCTCCTGGCC GACCGCTACG GCCCGCACCG CGTCTTCCTC
ATCGGCAGCG CGATCAGCGC ATGCTCGGCG CTGGCTTTTG CCGCCTTCGC GCACGGCCAT
CTTTCGGCAC TGCTGCTCTA CGGCCTGGCC GGGCTGTGCG CGGGCGCCTC GTACACGCCG
GGCCTGCAGC TGCTCGCGCG CAACGCCGAG CCCGCGGTGC GCGGCCGGGC GATGGGACTC
TTTCTTGGTT CGGCGTCGAT GGGCTACGCC TTGTCGCTGG CGGTGGTGGC GGCCTTCAGC
CACGCCCTGC ACTGGCGCTT CGGCCTGCTG GCGGCGGCGG GCTGCACCTT CGCCGGCGCA
CTGCTGACGG TGCCGGCGCT GCGGCGCATG CGGCCGCCCG CCGGCGCAGG AACGCCGCCG
CGCGAAGGCA CCTGGCATGC GCTGGCCGAG ACGGTGCGCG ACAAGCCCGC GATGGCCGGC
AACTGGGCCT ATGCCTTCCA CTGCTGGGAA CTGATGGCCC TGTGGGCCTG GCTGCCGGCC
TACCTGGTCG CATCGGCCGG CGGCGCCGCG CCGTGGCAGG GCGCGGGCAT TGCGCTGGCG
GCGTTCGCGC ACCTGGTGAG CGTGTTCGGC AGCATCGGGG GCGGTGCCGC GTCCGACCGC
TTCGGCCGCG CACGCATCAT GATGGCCGCC ACGCTCATGA GCCTGTGCAT GTCCTTCGCG
TTCGGCTGGA TGTGGACCTG GCCGCTGTGG CTGCTGGCCG TGATGGCCGC CCTCTACAAC
CTGCTGGCGA TTGCGGACTC CTCCGTCTAT TCGACCGCGC TGGCCGACGT GGTGGCGCCG
CACCGGCTGG GCGTGGCGTA CTCGGTGCGC TCGGTGATGG GCTTCGGCGC GGGTGCGCTG
AGCCCCTGGG TGTTCGGCCT GGTGCTGGAC TGGGGACAGA CGCGCTTCGG CTTCGGCAGC
ACGTACAGCT GGGTGGCGGC ATGGAGCTCG GTCGGGCTCG GCGCGCTGCT GGGGCCGTGG
ATGATCGTGC GCTTCGGCCG GCTGGAGCGC GCGCGGCGTG CGCGCTGA
|
|---|
| Protein sequence | MHCAEPAPAR GWLALLCASR LLQAMVVTAY SGVLPFMMAD WHMTAAQAGS IQSAWHVGYM
SSLFTVGLLA DRYGPHRVFL IGSAISACSA LAFAAFAHGH LSALLLYGLA GLCAGASYTP
GLQLLARNAE PAVRGRAMGL FLGSASMGYA LSLAVVAAFS HALHWRFGLL AAAGCTFAGA
LLTVPALRRM RPPAGAGTPP REGTWHALAE TVRDKPAMAG NWAYAFHCWE LMALWAWLPA
YLVASAGGAA PWQGAGIALA AFAHLVSVFG SIGGGAASDR FGRARIMMAA TLMSLCMSFA
FGWMWTWPLW LLAVMAALYN LLAIADSSVY STALADVVAP HRLGVAYSVR SVMGFGAGAL
SPWVFGLVLD WGQTRFGFGS TYSWVAAWSS VGLGALLGPW MIVRFGRLER ARRAR
|
|---|
| |