| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1313 |
|---|
| Symbol | |
|---|
| ID | 7972994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1429687 |
|---|
| End bp | 1430475 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644791911 |
|---|
| Product | citrate synthase |
|---|
| Protein accession | YP_002943230 |
|---|
| Protein GI | 239814320 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0372] Citrate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.65094 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CAAAGATCAA GAAATCCCTG CACACCGAGC TCGGCCACAG CACGCCCGAC
AAGATCACCG TGCGCGGGCG CGACCTGCCC TCCGAGATCC TGGGCCACCT GAACCTCGGC
GACATGGCCT TCCTGGAGCT CACGGGCCGC ATCCCGACAC CGCAGGAGTC GGTCACTTTC
AACGCCATCG TCGTCACGCT GGTCGAGCAC GGCATCACAC CCAGCGCGCT GGCCGCGCGC
CTCACCTATG CGGGCGCGCC CGAGGCGCTG CAGGCCGCGG TGGCCGCGGG CCTGTGCGGG
CTGGGCACGG TGTTCGTGGG CAGCACCGAA GGCGCAGCCA GGATGCTCTA CGAGGCCATT
CCCTTCGGCG AGAAGCCGGC GCGGCCGCTG GCCGACATGG CGAAGGACAT CGTGGCCGAC
CATCGCGCGC GCAAGCAGAT CGTGCCGGGC CTCGGGCATC CGCTGCACAA GCCGATCGAC
CCGCGCACGC CGCGCCTGTT CCAGATCGCC GAGGAGAACG GCCTCTCGGG CCATTACGTG
GCGCTGATGC AGGCGGTGCA GCAGGAGGCC GAGCGCGTCT CGGGCAAGTC GCTGCCCATC
AATGCGACGG GCGCCATCGG TGCGATTGCG GCCGAGTTCG GCTTTCCGTG GAAGATCATC
CGCGGCCTCG GCGTGATGGC GCGCGCCATC GGGCTCGTGG GCCACCTCCT CGAGGAAATC
GACGACCCGA TGGCCATCGA GATCTGGCAG CGCGTCGAAA AGGAAGCCGG CGGCCCGCGC
CAGGATTGA
|
|---|
| Protein sequence | MTTTKIKKSL HTELGHSTPD KITVRGRDLP SEILGHLNLG DMAFLELTGR IPTPQESVTF
NAIVVTLVEH GITPSALAAR LTYAGAPEAL QAAVAAGLCG LGTVFVGSTE GAARMLYEAI
PFGEKPARPL ADMAKDIVAD HRARKQIVPG LGHPLHKPID PRTPRLFQIA EENGLSGHYV
ALMQAVQQEA ERVSGKSLPI NATGAIGAIA AEFGFPWKII RGLGVMARAI GLVGHLLEEI
DDPMAIEIWQ RVEKEAGGPR QD
|
|---|
| |