| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1306 |
|---|
| Symbol | |
|---|
| ID | 7972987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 1422336 |
|---|
| End bp | 1423226 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644791904 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002943223 |
|---|
| Protein GI | 239814313 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.383591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAACCTGC ATTTCGACCT GTTCGACCTG AAACTGTTCG TCTACGTGGC GGACGCGCGC
AGCCTCACGC GCGGCGCCGA GAAGGCCTGC ATCTCGCTGG CGGCCGCGTC TACCCGCATC
AAGCAGATGG AAGAGGCCGT GGGCGGCAAG CTCTTGCACC GAAGCGCGCA GGGCGTGAGC
CTCACGGCGG CAGGGCAGGC GGTGCTCTAC CACGCCAAGC GCGTGATGCA GCAGATGGAG
CACCTGCGCT GCGACATGCA GGATTTCGGC AAGGGCATCA AGGGCCATGT GCGCGTGTTC
GCCAACACCA CCTCCATCAC CGAATACCTG CCGCAGAAGC TGGCCGGCTT TCTCACGCAG
CATCCGGCAG TGCAGGTGGA CCTGCGCGAA TACCTGAGCG AGGAGATCGT GCGCGCCGTG
GCCGATGGCG AGGCCGACAT CGGCATCCTG GCCGGCGACG TGCACACCGG CGAGCTCGAC
GCGCGCCCCT TCGGCCGCAA CCAGCTGGTG CTGGTGGTGC CCGCCGCGCA CCACATGGCG
GGTGCGGCCT CGGTGGCCTT TGCCGACACG CTCGACGAGC AGCACGTGGG CCTGCACCAC
GGCAGCGCCA TCCACCGCTT TCTGCAGCGC CGGGCCGAGC TGGCCGGCCG CGGCTTCAAC
CCGCGCATCC AGGTCAGCAG CTTCGAGGCG ATCTGCCTGA TGATCGAGGC GGGCGTGGGG
GTGGGCGTGC TGCCGGCCTC GTCGGCGCAG CGGCTGTCGA TGGCGATGCG CATCGCGACC
GTGGCGCTCA GCGATGCCTG GGCCGAGCGC GAGCTCAAGC TCATCGCACG CAGCCGCGAG
CAGCTGCCGG CCTCGGCGCG CGAGCTGTTC GACCACCTCG TTGCGCCCTG A
|
|---|
| Protein sequence | MNLHFDLFDL KLFVYVADAR SLTRGAEKAC ISLAAASTRI KQMEEAVGGK LLHRSAQGVS
LTAAGQAVLY HAKRVMQQME HLRCDMQDFG KGIKGHVRVF ANTTSITEYL PQKLAGFLTQ
HPAVQVDLRE YLSEEIVRAV ADGEADIGIL AGDVHTGELD ARPFGRNQLV LVVPAAHHMA
GAASVAFADT LDEQHVGLHH GSAIHRFLQR RAELAGRGFN PRIQVSSFEA ICLMIEAGVG
VGVLPASSAQ RLSMAMRIAT VALSDAWAER ELKLIARSRE QLPASARELF DHLVAP
|
|---|
| |