Gene Vapar_1270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1270 
Symbol 
ID7973194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp1385843 
End bp1386403 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content64% 
IMG OID644791867 
ProductHNH endonuclease 
Protein accessionYP_002943187 
Protein GI239814277 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.210243 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGGTCT TGAAGCTGTC GGCCCAAGGG CTGCCCCAGT CATGGATATC GCTCGAACAG 
GCGGTCATCC ACTATGCAGC GGACGAAGTC CGCTGGGAGG TGGGCGCGCA GGTGGCCGTG 
TTCCGTGGCG GCCACAATGC CATCACCGGC CAGCAGTCGC AGATCGCGAT CAACAGCATC 
ATCGGCACCA AGGGCGTGCC GCGCATCAAT CCCTTCACCC AGCGCCCGGG GCTCACCAAC 
AGCAAGCTGT TCTCGCGCGA CCGCAACATC TGTGCTTACT GCGGCGGGCA TTTCCACGAA 
GACGAGCTCA CGCGCGAACA CATCATCCCG TTCGCGCAGA ACGGCATCGA CACCTGGATG 
AACGTGGTCA CCGCCTGCCG GCCCTGCAAC CACCGCAAGA GCAGCCGCAC GCCCGAGCAG 
GCCAACATGC CGCTGCTGTA CGCACCCTAC GTGCCCAGCC TCTGGGAAGA TTTCATTTTG 
CGAAACCGCC GCATCCTGGC GGACCAGATG GAATTCCTGA TGGCGCACCT GCCGCAGAGC 
TCGCGGCTGC ACGACACCTA G
 
Protein sequence
MKVLKLSAQG LPQSWISLEQ AVIHYAADEV RWEVGAQVAV FRGGHNAITG QQSQIAINSI 
IGTKGVPRIN PFTQRPGLTN SKLFSRDRNI CAYCGGHFHE DELTREHIIP FAQNGIDTWM 
NVVTACRPCN HRKSSRTPEQ ANMPLLYAPY VPSLWEDFIL RNRRILADQM EFLMAHLPQS 
SRLHDT