| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1266 |
|---|
| Symbol | |
|---|
| ID | 7973190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 1379935 |
|---|
| End bp | 1380945 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644791863 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_002943183 |
|---|
| Protein GI | 239814273 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.210708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCC AAGCCGTTGC AGCCAAAGCC GGAGTTTCCG TGGCCACCGT GTCGCGGGCC
TTCAATTTCC CCGACAAGGT GACCCGCTCC ACGCGCGAGC TGGTGGAGCG CGTCGCGCGT
GAACTCGACT ACGTGCCGAA TGCCAGCGCG CGCACCTTGC GCACCCAGCG CAGCCGTGCG
CTGGGCGTGG TGCTGCCGAC GCTCTTGAAT CCGACCTTTG CCGAATGCCT GCAGGGCATC
GCACGCGCGG CCATCGCCGG CGGCTACGCG ATCATTCCCA TCACCACCGG CTACCAGCTC
GACGAGGAAG AGCGCGCGGT CCACCTGCTT CTGGCCGGCA ATGTCGACGG GCTGATCCTC
GTGGTCTCCA ATCCTTCCAC GTCGGCCGCG CTGGCCCGGC TGCGCGGCAC CGGCACGCCC
TACGTGCTGG CCTACAACAG GCACCCCGAG CATCCCTGCG TGACCGTCGA TGGCGAAGCG
GCCGTGGCCG ATGCGGTGGC GCGGCTGGTG CTGCACGGGC ATCGCCGCAT CGCAATGGTC
AGCGGCACGC TCGCCGCGTC CGACCGCGCG CAGCAGCGCT ACCGCGGCTA CCGCAAGGGC
ATGGCCGATG CCGGGCTCAA GGCACCGCCG CTGATCGAGG TGCCGTTTGT CGAAAGCGCG
GTCGATGCGC TCGCCGGCGT GCTGCAGGCG CCCGGCCGGC CCACTGCGCT GGTCTGCTCG
AACGACCTGC TCGCCATCCG CAGCATCCGC GCCGCGCACC TGGGCGGCCT TGCCGTGCCG
GACGACCTCA GCGTCATCGG CTTCGACGGC ATCGCGCTCG GCGAAGACCT GACGCCGGCG
CTCACCACCA TCGCGCAGCC CAACGACGAC ATCGGCCGCC GCAGCGTCGA GCTGCTGATC
CAGGCCATGG CCGGCGGCAC CGCGCTGCAG GCCGATGCGA GCCTGCTGCT GCCGTACTTC
TTCCGCGACG GCGAATCGTG CGCGGCCGCG CGCGACAACG CCAACGACTG A
|
|---|
| Protein sequence | MSIQAVAAKA GVSVATVSRA FNFPDKVTRS TRELVERVAR ELDYVPNASA RTLRTQRSRA
LGVVLPTLLN PTFAECLQGI ARAAIAGGYA IIPITTGYQL DEEERAVHLL LAGNVDGLIL
VVSNPSTSAA LARLRGTGTP YVLAYNRHPE HPCVTVDGEA AVADAVARLV LHGHRRIAMV
SGTLAASDRA QQRYRGYRKG MADAGLKAPP LIEVPFVESA VDALAGVLQA PGRPTALVCS
NDLLAIRSIR AAHLGGLAVP DDLSVIGFDG IALGEDLTPA LTTIAQPNDD IGRRSVELLI
QAMAGGTALQ ADASLLLPYF FRDGESCAAA RDNAND
|
|---|
| |