| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1230 |
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| Symbol | |
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| ID | 7973154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1344888 |
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| End bp | 1346036 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791827 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_002943147 |
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| Protein GI | 239814237 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.520921 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCT TCTTCAAGCC CCTGCTGATC GCCGCGCTGT GCGCCACCGC CGCCGCGGCC
TGGGCCGACG TCAATGTGGG CGTGACGCTG TCGGCCACCG GCCCGGCCGC CTCGCTCGGC
ATTCCCGAGA AGAACACCAT TGCGCTGATG CCCAAGACCA TCGGCGGCCA GAAGATCAAC
TACATCGTGC TAGACGACGC CTCCGACACC ACGGCCGCGG TGGCCAACAC GCGCAAGCTC
ATCGCCGAGA ACAAGGTCGA CATCGTGCTG GGCTCGACCA CCACGCCCAA CTCGCTCGCG
ATGATCGACG TGGTGAGCGA AGCCAAGACG CCGATGATCT CGATTGCCGC GTCGGCCCGC
ATCGTCGAGC CCATGGATGC CAAGAAGCAG TGGGTCTTCA AGACGCCGCA GAACGACATC
ATGATGTCGC TCGCCATTGC CGAGCACATG GCCGCGAGCG GCGTGAAGAC GGTGGCCTTC
ATCGGCTTTT CCGATGCGTA CGGCGAGGGC TGGTCGCAGG AATTCGCCAA AGCGGCGGAG
CTGAAGAAGC TCAAGATCGT GGCCAACGAG CGCTATGCGC GCACCGACAC CTCGGTGACC
GGCCAGGCGC TGAAGATCAT GGCCGCCAAG GCCGACGCGG TGCTGGTCGC GGGCTCGGGC
ACGCCGGCCG CGCTGCCGCA GAAGACGCTC AAGGAGCGCG GCTACACCGG CAAGATGTAC
CAGACGCACG GCGTGGCCAA TGCCGACTTC CTGCGCGTCG GCGGCAAGGA CGTGGAAGGC
ACCTTCCTGC CTGCCGGCCC GGTGCTGGTG GCCGAGCAGC TGCCCGCGAG CCATCCGGTG
AAGAAATCGG CCATGGCCTA CGTCACCGCC TACGAGGCCG CGAACGGCAA GAACTCGGTG
TCGACCTTCG GCGCGCACGC CTGGGACGCG GGCCTCTTGA TGACCTCGGC CGTGCCGGTG
GCGCTCAAGA AGGCGCAGCC CGGCACGCCC GAATTCCGCG CCGCGCTGCG CGATGCGCTC
GAGCAGGTCA AGGAAGTGTC GGGCGCGCAC GGCGTGTTCA ACATGACCGC CAACGATCAT
CTGGGTCTCG ACCAGCGTGC CCGGGTCATG GTCAAGATCG AGAACGGCGC CTGGAAATAC
CAACCCTGA
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| Protein sequence | MKFFFKPLLI AALCATAAAA WADVNVGVTL SATGPAASLG IPEKNTIALM PKTIGGQKIN
YIVLDDASDT TAAVANTRKL IAENKVDIVL GSTTTPNSLA MIDVVSEAKT PMISIAASAR
IVEPMDAKKQ WVFKTPQNDI MMSLAIAEHM AASGVKTVAF IGFSDAYGEG WSQEFAKAAE
LKKLKIVANE RYARTDTSVT GQALKIMAAK ADAVLVAGSG TPAALPQKTL KERGYTGKMY
QTHGVANADF LRVGGKDVEG TFLPAGPVLV AEQLPASHPV KKSAMAYVTA YEAANGKNSV
STFGAHAWDA GLLMTSAVPV ALKKAQPGTP EFRAALRDAL EQVKEVSGAH GVFNMTANDH
LGLDQRARVM VKIENGAWKY QP
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