Gene Vapar_1229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1229 
Symbol 
ID7973153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1343762 
End bp1344790 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content69% 
IMG OID644791826 
Productinner-membrane translocator 
Protein accessionYP_002943146 
Protein GI239814236 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCTGC AGATCGCCCT GCTTCTGGGG CAGGACGGCA TCGTGAACGG CGCCGTCTAC 
GGATTGATGG CGCTCGCGCT GGTGCTGGTG TTCTCGGTCA CGCGCGTCAT CTTCATTCCC
CAGGGCGAGT TCGTCGCCTT CGGGGCGCTC TCGATGGCGG TGCTGCAGGC CGGCCGCGTG
CCGGCCACGC TGTGGCTGCT GCTCGCGCTG GCGGCGATGG TGCTGGTGGT CGAGTTCTGG
CGCTGGAAGC GCGGCGCGGT GGTCGACTGG GCCTCCGCGC TCGCATGGTG CGTGGTGCTG
CCGCTGGCCG CGGCCGCGCT GGTGCTGCTG CTCAAGCCCA CGTCGATGGC GGGCCAGGCG
CTCGCCACGC TGCTGCTCAT CATGCCGCTC GGGCCGCTGC TCTATCGCCT GGCCTACCGG
CCACTGGCCA GCGCCAACGT GCTGATGCTG CTGATCGTTT CCGTCGCGCT GCATGGCGTG
CTGGTGGGCC TGGGCCTCCT GTTCTTCGGT GCCGAGGGCT ATCGCACCAC GGCGTTCTCC
GAGGAGCGCT TCGACATCGG CGGCATCCCG GTCGGCGGGC AGTCGCTGGT GGTGGTCGGC
GTCACGCTGC TGCTGGTGCT TGCGATGTTC CTGTTCTTCG GCCGCTCGAT GATCGGCAAG
GCGCTGCGCG CCACCGCCAT CAACCGCGTG GGCGCGCGGC TGTCGGGCAT TCCGACGGAG
CTCTCGGGCG ACCTGAGCTT TGCGCTTGCG GCGCTCATCG GCGCGGTTTC GGGCCTGCTG
ATTGCGCCGC TCACCACGGT GTACTACGAC ACCGGCTTCC TGATCGGGCT GAAAGGCTTC
GTCGCCGCCA TCGTGGGCGG GCTGGCGAGC TATCCGCTGG CGCTCGCGGG CGCGCTGCTG
GTCGGGCAGC TCGAGGCCTT TGCCTCGTTC TGGGCCAGTC CGTTCAAGGA GGTGCTGGTC
TTCACGCTGA TCATTCCGGT GCTGTGGTGG CGTTCGCTGC ACAGCCACCA TGTGGAGGAC
GAGGAATGA
 
Protein sequence
MDLQIALLLG QDGIVNGAVY GLMALALVLV FSVTRVIFIP QGEFVAFGAL SMAVLQAGRV 
PATLWLLLAL AAMVLVVEFW RWKRGAVVDW ASALAWCVVL PLAAAALVLL LKPTSMAGQA
LATLLLIMPL GPLLYRLAYR PLASANVLML LIVSVALHGV LVGLGLLFFG AEGYRTTAFS
EERFDIGGIP VGGQSLVVVG VTLLLVLAMF LFFGRSMIGK ALRATAINRV GARLSGIPTE
LSGDLSFALA ALIGAVSGLL IAPLTTVYYD TGFLIGLKGF VAAIVGGLAS YPLALAGALL
VGQLEAFASF WASPFKEVLV FTLIIPVLWW RSLHSHHVED EE