Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_1229 |
Symbol | |
ID | 7973153 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 1343762 |
End bp | 1344790 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644791826 |
Product | inner-membrane translocator |
Protein accession | YP_002943146 |
Protein GI | 239814236 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCTGC AGATCGCCCT GCTTCTGGGG CAGGACGGCA TCGTGAACGG CGCCGTCTAC GGATTGATGG CGCTCGCGCT GGTGCTGGTG TTCTCGGTCA CGCGCGTCAT CTTCATTCCC CAGGGCGAGT TCGTCGCCTT CGGGGCGCTC TCGATGGCGG TGCTGCAGGC CGGCCGCGTG CCGGCCACGC TGTGGCTGCT GCTCGCGCTG GCGGCGATGG TGCTGGTGGT CGAGTTCTGG CGCTGGAAGC GCGGCGCGGT GGTCGACTGG GCCTCCGCGC TCGCATGGTG CGTGGTGCTG CCGCTGGCCG CGGCCGCGCT GGTGCTGCTG CTCAAGCCCA CGTCGATGGC GGGCCAGGCG CTCGCCACGC TGCTGCTCAT CATGCCGCTC GGGCCGCTGC TCTATCGCCT GGCCTACCGG CCACTGGCCA GCGCCAACGT GCTGATGCTG CTGATCGTTT CCGTCGCGCT GCATGGCGTG CTGGTGGGCC TGGGCCTCCT GTTCTTCGGT GCCGAGGGCT ATCGCACCAC GGCGTTCTCC GAGGAGCGCT TCGACATCGG CGGCATCCCG GTCGGCGGGC AGTCGCTGGT GGTGGTCGGC GTCACGCTGC TGCTGGTGCT TGCGATGTTC CTGTTCTTCG GCCGCTCGAT GATCGGCAAG GCGCTGCGCG CCACCGCCAT CAACCGCGTG GGCGCGCGGC TGTCGGGCAT TCCGACGGAG CTCTCGGGCG ACCTGAGCTT TGCGCTTGCG GCGCTCATCG GCGCGGTTTC GGGCCTGCTG ATTGCGCCGC TCACCACGGT GTACTACGAC ACCGGCTTCC TGATCGGGCT GAAAGGCTTC GTCGCCGCCA TCGTGGGCGG GCTGGCGAGC TATCCGCTGG CGCTCGCGGG CGCGCTGCTG GTCGGGCAGC TCGAGGCCTT TGCCTCGTTC TGGGCCAGTC CGTTCAAGGA GGTGCTGGTC TTCACGCTGA TCATTCCGGT GCTGTGGTGG CGTTCGCTGC ACAGCCACCA TGTGGAGGAC GAGGAATGA
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Protein sequence | MDLQIALLLG QDGIVNGAVY GLMALALVLV FSVTRVIFIP QGEFVAFGAL SMAVLQAGRV PATLWLLLAL AAMVLVVEFW RWKRGAVVDW ASALAWCVVL PLAAAALVLL LKPTSMAGQA LATLLLIMPL GPLLYRLAYR PLASANVLML LIVSVALHGV LVGLGLLFFG AEGYRTTAFS EERFDIGGIP VGGQSLVVVG VTLLLVLAMF LFFGRSMIGK ALRATAINRV GARLSGIPTE LSGDLSFALA ALIGAVSGLL IAPLTTVYYD TGFLIGLKGF VAAIVGGLAS YPLALAGALL VGQLEAFASF WASPFKEVLV FTLIIPVLWW RSLHSHHVED EE
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