| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1182 |
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| Symbol | |
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| ID | 7973351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1292251 |
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| End bp | 1293069 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644791778 |
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| Product | Sec-independent protein translocase, TatC subunit |
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| Protein accession | YP_002943099 |
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| Protein GI | 239814189 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
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| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGATT CCGACAACAA GAACAAAGAC GCAGAAGACG AGCTGGCAGG CACCGAGCAA
CCGTTCGTGC AACATCTGGT CGAGCTGCGC GACCGGCTGC TCTACTGCGT CTACGGCCTG
GCGGTCGCGG GCATCCTGCT TGCCATCTGG CCCGGCCCGG GCGGGCTGAT CGACCTGATC
GCAATGCCGA TCCGCGCACA CATGCCGCCG GACGCCAAGC TCATCGCCAT TGGCGTGTTC
TCGCCGTTCT TCGTGCCGCT CAAGGTGCTC ATGATGACGG CGGTGCTGCT GGCGCTGCCC
TGGCTCATGT ACCAGGCCTG GATGTTCATT GCGCCGGGGC TCTACAGCCA TGAAAAGCGC
TTTGCGCTGC CGCTGATCTT CTTCGGCAGC CTGCTGGCCT ATGCGGGCAT CGCCTTCGTG
CAGTTCTTCG TGCTGGACAA GATGTTCAGC TTCATCCAGA AGTTCACGCC GGCCGCGGTG
GCGGCCACGC CCGACATCTC CTCGTACGTC GAGGCCATCC TCTCGCTCTA CATCGCGTTC
GGCGTGGCCT TCCAGGTGCC GATCGTCGTG ATGCTGCTGG TGCGCTTCGA GATGGTCACC
ATCGAGAAGC TCAAGTCCTT CCGCGGCTAC TTCATCGTGG TGGCCTTCGT GGTGGCCGCG
GTGCTCACGC CGCCGGACGT GGTGTCGCAG CTTGCGCTGG CGGTGCCGAT GTGCCTGCTC
TACGAGGTCG GCATCATCGG CGCGCGCTAT TTCGCAAATA CCACCAAGAA ATCCGAAGAG
GAAGAAAAAG AAAGCGCCGA TTCGTCGGCG TCTTCCTGA
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| Protein sequence | MADSDNKNKD AEDELAGTEQ PFVQHLVELR DRLLYCVYGL AVAGILLAIW PGPGGLIDLI
AMPIRAHMPP DAKLIAIGVF SPFFVPLKVL MMTAVLLALP WLMYQAWMFI APGLYSHEKR
FALPLIFFGS LLAYAGIAFV QFFVLDKMFS FIQKFTPAAV AATPDISSYV EAILSLYIAF
GVAFQVPIVV MLLVRFEMVT IEKLKSFRGY FIVVAFVVAA VLTPPDVVSQ LALAVPMCLL
YEVGIIGARY FANTTKKSEE EEKESADSSA SS
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