| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1140 |
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| Symbol | |
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| ID | 7973309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1253309 |
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| End bp | 1254388 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644791736 |
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| Product | type IV pilus assembly protein PilM |
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| Protein accession | YP_002943057 |
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| Protein GI | 239814147 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.267286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGCTGCTT TCGGATCATT GTTTCGCCGT CAGAACGCCC CCATGCTCGG CCTGGATGTC
AGCTCTTCCA GCGTGAAGCT GGTCGAGCTC GGCCGTGAAG CCAGTGGCAA GCTGGTTCTC
GAGCGCTGCG CGATCGAACC CCTGGAACGG GGCTGGATCA CCGACGGCAA CGTCGAGAAG
TTCGACGAAG TGGCCGAAGC CGTCCGCCGG GTCGTGCGCA AGAGCGGCAC CCGCACGCGC
AACGTCGCGC TGGCGCTGCC TCCCTCGGCG GTCATCACCA AGAAGATCAT TCTTCCGGGC
GGCATGAGCG AGCAGGAGCT CGAAATCCAG GTCGAGTCCG AAGCCAACCA GTACATCCCG
TTCTCGCTCG ACGAGGTCAG CCTCGATTTC TGCGTGACCG GGCAGAGCAC CGCCTCTGCC
GGCGACGTCG AGGTGCTGAT TGCCGCGTCC CGCAAGGAAA AGGTGCAGGA CCGCGAAGGC
CTGGCCGAAG CGGCCGGGCT GAAGGCGGTG ATCCTCGACG TCGAGTCCTA CGCTTCCCGA
CTCGCGACCG CCCGCCTGAT CGAGCAATTG CCCGGCAAGG GCCTCGATGC CGTGGTGGCG
CTTTTCGAAG TGGGTGCCTT CACCACCAGC ATGCAGGTGC TGCGCAACCA GGAAGTGCTG
TATGACCGCG ACCAGGCCTT CGGCGGCGCG CAGCTGACCC AGCTGATCGT GCGCCAGTAC
GGTTTCTCGG CCGAAGAGGC CGAAGCCAAG AAGCGCAGCG GCGACCTGCC CGACGACTAC
GGCTCGGGCG TCCTGAAGCC CTTCGTGGAA AGCATCGCGC AGGAGATTGC CCGTGCGCTG
CAGTTCTTCT TCACCAGCAC GCCCCACAAC CGGGTGGACT ACGTGCTGCT TGCCGGCGGC
TCGGCCTCGC TGCCCAGCCT GACCAGCGCC GTGACGCGCC AGACCTCGTT CGCCTGTTCG
CTCGTGAACC CGTTCGACGG CATGGAACTG GGCCCGAACA TCCGCGAGAA GAAGGTCCGG
CGCGAAGCGC CTTCCTACCT GACCTCTTGC GGCCTGGCCA TGCGGAGGTT CGTGCAGTGA
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| Protein sequence | MAAFGSLFRR QNAPMLGLDV SSSSVKLVEL GREASGKLVL ERCAIEPLER GWITDGNVEK
FDEVAEAVRR VVRKSGTRTR NVALALPPSA VITKKIILPG GMSEQELEIQ VESEANQYIP
FSLDEVSLDF CVTGQSTASA GDVEVLIAAS RKEKVQDREG LAEAAGLKAV ILDVESYASR
LATARLIEQL PGKGLDAVVA LFEVGAFTTS MQVLRNQEVL YDRDQAFGGA QLTQLIVRQY
GFSAEEAEAK KRSGDLPDDY GSGVLKPFVE SIAQEIARAL QFFFTSTPHN RVDYVLLAGG
SASLPSLTSA VTRQTSFACS LVNPFDGMEL GPNIREKKVR REAPSYLTSC GLAMRRFVQ
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